miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24867 3' -60.9 NC_005284.1 + 12357 0.66 0.478794
Target:  5'- cGCGAUUCGcCGCGGGUgGGCucguuggcgggaGCGCgGGa -3'
miRNA:   3'- -CGUUGGGC-GCGUCCGgCUG------------CGUGgCC- -5'
24867 3' -60.9 NC_005284.1 + 4905 0.66 0.478794
Target:  5'- uCAGCCCGCgGC-GGCCGGCcuuCCGc -3'
miRNA:   3'- cGUUGGGCG-CGuCCGGCUGcguGGCc -5'
24867 3' -60.9 NC_005284.1 + 29731 0.66 0.478794
Target:  5'- --cACCaCGuCGgGGcGCCGAacaGCACCGGc -3'
miRNA:   3'- cguUGG-GC-GCgUC-CGGCUg--CGUGGCC- -5'
24867 3' -60.9 NC_005284.1 + 30040 0.66 0.478794
Target:  5'- uCGACCgGgucggguguaGCGGGCCGAagaCGCACgGGc -3'
miRNA:   3'- cGUUGGgCg---------CGUCCGGCU---GCGUGgCC- -5'
24867 3' -60.9 NC_005284.1 + 10018 0.66 0.478794
Target:  5'- cGCGGCCuUGCGCAaGCCGAgcgugauguCGCGCUu- -3'
miRNA:   3'- -CGUUGG-GCGCGUcCGGCU---------GCGUGGcc -5'
24867 3' -60.9 NC_005284.1 + 39824 0.66 0.478794
Target:  5'- cGCGugCCGCauugcauggGCGcGGCCGAUGUucucgcuguACCGa -3'
miRNA:   3'- -CGUugGGCG---------CGU-CCGGCUGCG---------UGGCc -5'
24867 3' -60.9 NC_005284.1 + 30878 0.66 0.477826
Target:  5'- gGCAGCgcacuggUCGCGCAGcGaCCGAgcccagucgggaUGCAUCGGg -3'
miRNA:   3'- -CGUUG-------GGCGCGUC-C-GGCU------------GCGUGGCC- -5'
24867 3' -60.9 NC_005284.1 + 11908 0.66 0.473001
Target:  5'- aGgAAUCCGCGCAgaacgcagcgcagauGGCCGAggagGCGCUGa -3'
miRNA:   3'- -CgUUGGGCGCGU---------------CCGGCUg---CGUGGCc -5'
24867 3' -60.9 NC_005284.1 + 43858 0.66 0.469158
Target:  5'- -aGGCCgGCcauGCGGGCCuGCGCAUCa- -3'
miRNA:   3'- cgUUGGgCG---CGUCCGGcUGCGUGGcc -5'
24867 3' -60.9 NC_005284.1 + 5808 0.66 0.469158
Target:  5'- aCAGCCCcguccagccGCGCAGcaccgcuucGUCGAUGCaguccGCCGGg -3'
miRNA:   3'- cGUUGGG---------CGCGUC---------CGGCUGCG-----UGGCC- -5'
24867 3' -60.9 NC_005284.1 + 23577 0.66 0.469158
Target:  5'- cCAGCCgGaGCGGGUcgagcgguucauCGACGCGgCGGg -3'
miRNA:   3'- cGUUGGgCgCGUCCG------------GCUGCGUgGCC- -5'
24867 3' -60.9 NC_005284.1 + 9637 0.66 0.469158
Target:  5'- gGCGgagGCUucaGCGCAGGCCGA-GCuCgCGGg -3'
miRNA:   3'- -CGU---UGGg--CGCGUCCGGCUgCGuG-GCC- -5'
24867 3' -60.9 NC_005284.1 + 5605 0.66 0.469158
Target:  5'- gGCAGCCuCGCGCAGcauuuCCuccauCGCcucGCCGGg -3'
miRNA:   3'- -CGUUGG-GCGCGUCc----GGcu---GCG---UGGCC- -5'
24867 3' -60.9 NC_005284.1 + 10712 0.66 0.465332
Target:  5'- cGCAGaaaggCGCGCAGGCacucgccgcaaugGAUGCugCGGc -3'
miRNA:   3'- -CGUUgg---GCGCGUCCGg------------CUGCGugGCC- -5'
24867 3' -60.9 NC_005284.1 + 52722 0.66 0.459623
Target:  5'- aGCAACCCuucauauacGgGguGGCCGGUGUggcuaagcaGCCGGc -3'
miRNA:   3'- -CGUUGGG---------CgCguCCGGCUGCG---------UGGCC- -5'
24867 3' -60.9 NC_005284.1 + 52606 0.66 0.459623
Target:  5'- -uGACCaaagaGCGCGGGCUGAauuugccgcCGCACgGa -3'
miRNA:   3'- cgUUGGg----CGCGUCCGGCU---------GCGUGgCc -5'
24867 3' -60.9 NC_005284.1 + 38844 0.66 0.458675
Target:  5'- -aGGCCgGCGUcgcGcGCCGACGUcaggaacGCCGGa -3'
miRNA:   3'- cgUUGGgCGCGu--C-CGGCUGCG-------UGGCC- -5'
24867 3' -60.9 NC_005284.1 + 30763 0.66 0.450192
Target:  5'- aGCGGCCgG-GUAGGCgagccaugCGAuCGCACCGa -3'
miRNA:   3'- -CGUUGGgCgCGUCCG--------GCU-GCGUGGCc -5'
24867 3' -60.9 NC_005284.1 + 3313 0.66 0.450192
Target:  5'- uGCGAgCCgauaGUGCAGGCCGA-GCGgCGu -3'
miRNA:   3'- -CGUUgGG----CGCGUCCGGCUgCGUgGCc -5'
24867 3' -60.9 NC_005284.1 + 5400 0.66 0.440868
Target:  5'- uGCuuGCCCGUGCGGcgcGCCagcuCGCGCuCGGc -3'
miRNA:   3'- -CGu-UGGGCGCGUC---CGGcu--GCGUG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.