miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24867 5' -55 NC_005284.1 + 48010 0.66 0.724933
Target:  5'- uCGCGGGCGUGACGcgCgUGAcCg--- -3'
miRNA:   3'- -GCGCUCGCGCUGCuaGgACUuGacua -5'
24867 5' -55 NC_005284.1 + 45120 0.67 0.670598
Target:  5'- uGCGA-CGCuGCGAUCgUcGAGCUGAUg -3'
miRNA:   3'- gCGCUcGCGcUGCUAGgA-CUUGACUA- -5'
24867 5' -55 NC_005284.1 + 23988 0.67 0.648529
Target:  5'- cCGCGAuCGgGACGAUCC-GGACUa-- -3'
miRNA:   3'- -GCGCUcGCgCUGCUAGGaCUUGAcua -5'
24867 5' -55 NC_005284.1 + 49738 0.68 0.626398
Target:  5'- uCGCGAGCGUGAUGGauggCaUGAacGCUGAc -3'
miRNA:   3'- -GCGCUCGCGCUGCUa---GgACU--UGACUa -5'
24867 5' -55 NC_005284.1 + 22261 0.68 0.615336
Target:  5'- cCGCGAGgGUGGCGAgCCUGAcgaACa--- -3'
miRNA:   3'- -GCGCUCgCGCUGCUaGGACU---UGacua -5'
24867 5' -55 NC_005284.1 + 2640 0.68 0.571327
Target:  5'- gGCGGGUGUGcucauCGGcCUUGAGCUGAUg -3'
miRNA:   3'- gCGCUCGCGCu----GCUaGGACUUGACUA- -5'
24867 5' -55 NC_005284.1 + 7657 0.69 0.549589
Target:  5'- aCGUGGGCgGCGuCGGUCaaUGGGCUGAUu -3'
miRNA:   3'- -GCGCUCG-CGCuGCUAGg-ACUUGACUA- -5'
24867 5' -55 NC_005284.1 + 44881 0.69 0.538815
Target:  5'- gCGCGAGCGCGAgCGAcgCUUcGGcgcGCUGAg -3'
miRNA:   3'- -GCGCUCGCGCU-GCUa-GGA-CU---UGACUa -5'
24867 5' -55 NC_005284.1 + 13421 0.7 0.465798
Target:  5'- cCGCGGGCGUgucucGGCGAUCCgcaggccagaUGAcCUGAUa -3'
miRNA:   3'- -GCGCUCGCG-----CUGCUAGG----------ACUuGACUA- -5'
24867 5' -55 NC_005284.1 + 49341 0.71 0.426439
Target:  5'- aCGCGuGCGCGACGA-CC-GAACUa-- -3'
miRNA:   3'- -GCGCuCGCGCUGCUaGGaCUUGAcua -5'
24867 5' -55 NC_005284.1 + 11825 0.71 0.426439
Target:  5'- gCGCGAGCGCGGCuAUCUcGAGCa--- -3'
miRNA:   3'- -GCGCUCGCGCUGcUAGGaCUUGacua -5'
24867 5' -55 NC_005284.1 + 3225 0.74 0.283462
Target:  5'- aCGCGgauugaacaggcAGCGCGACGGUCCcu-GCUGAg -3'
miRNA:   3'- -GCGC------------UCGCGCUGCUAGGacuUGACUa -5'
24867 5' -55 NC_005284.1 + 32256 0.78 0.171549
Target:  5'- uCGCcuGCGCGACGAUCUUGAACUcGGUc -3'
miRNA:   3'- -GCGcuCGCGCUGCUAGGACUUGA-CUA- -5'
24867 5' -55 NC_005284.1 + 22028 1.05 0.001884
Target:  5'- gCGCGAGCGCGACGAUCCUGAACUGAUc -3'
miRNA:   3'- -GCGCUCGCGCUGCUAGGACUUGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.