miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24868 3' -59.7 NC_005284.1 + 47886 0.65 0.465128
Target:  5'- cGAGCACcucaaccgcgcuuGCGCGaGCAGUuccCGCCgACg -3'
miRNA:   3'- cUUCGUG-------------CGCGC-CGUCGua-GCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 46108 0.66 0.460202
Target:  5'- --uGCACGCuuGCGGCGuucgaggcaaacgccGCAUCcgcugugcGCCCGCc -3'
miRNA:   3'- cuuCGUGCG--CGCCGU---------------CGUAG--------CGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 33168 0.66 0.446561
Target:  5'- -cGGCGucgaGCGCGGCGcGCGagaucUUGCCCAa -3'
miRNA:   3'- cuUCGUg---CGCGCCGU-CGU-----AGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 33225 0.66 0.446561
Target:  5'- cGAAcGCcCGCGCGGCcuGC-UCGUCgGCa -3'
miRNA:   3'- -CUU-CGuGCGCGCCGu-CGuAGCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 28508 0.66 0.446561
Target:  5'- -cGGUGUGCGCGGCGGCGauuuggagCGCCUucACg -3'
miRNA:   3'- cuUCGUGCGCGCCGUCGUa-------GCGGG--UG- -5'
24868 3' -59.7 NC_005284.1 + 24393 0.66 0.445595
Target:  5'- --cGCugGCggcaauucgaucgGCGGUgggaagAGCGUCGuCCCGCa -3'
miRNA:   3'- cuuCGugCG-------------CGCCG------UCGUAGC-GGGUG- -5'
24868 3' -59.7 NC_005284.1 + 43544 0.66 0.445595
Target:  5'- -uAGCGCGCGCaaGGUccggacgGGUuUCGCCCGu -3'
miRNA:   3'- cuUCGUGCGCG--CCG-------UCGuAGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 36020 0.66 0.436955
Target:  5'- cGAGCACGgGCGGUacuGGCGauugguaugcUCGUCCu- -3'
miRNA:   3'- cUUCGUGCgCGCCG---UCGU----------AGCGGGug -5'
24868 3' -59.7 NC_005284.1 + 9719 0.66 0.436955
Target:  5'- cGAGCGCGUaGCcGC-GC-UCGCCCGCc -3'
miRNA:   3'- cUUCGUGCG-CGcCGuCGuAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 20811 0.66 0.436955
Target:  5'- gGAAGCAUaGCGuCGGUcGCgucGUCGCUUACg -3'
miRNA:   3'- -CUUCGUG-CGC-GCCGuCG---UAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 43604 0.66 0.42747
Target:  5'- cGAAGgcuugcuuucCGCGCGCGGCGGCcgCGgCgCGa -3'
miRNA:   3'- -CUUC----------GUGCGCGCCGUCGuaGCgG-GUg -5'
24868 3' -59.7 NC_005284.1 + 18464 0.66 0.417179
Target:  5'- aGGGCAaguaccuCGCGCGGguGCG-CGCCgAg -3'
miRNA:   3'- cUUCGU-------GCGCGCCguCGUaGCGGgUg -5'
24868 3' -59.7 NC_005284.1 + 5708 0.66 0.413474
Target:  5'- --cGCACGUGgcagcucCGGCGGCGaugaacaagaaggCGCCCGCc -3'
miRNA:   3'- cuuCGUGCGC-------GCCGUCGUa------------GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 36841 0.67 0.408872
Target:  5'- uGAAGCGauCGC-CGGCGGCgAUUGUCgGCg -3'
miRNA:   3'- -CUUCGU--GCGcGCCGUCG-UAGCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 54615 0.67 0.408872
Target:  5'- cGAAG-GCGCGgGGUGGCAcCGaCCACg -3'
miRNA:   3'- -CUUCgUGCGCgCCGUCGUaGCgGGUG- -5'
24868 3' -59.7 NC_005284.1 + 15312 0.67 0.408872
Target:  5'- --uGCGgGCGCaGCGGCAUCGCg--- -3'
miRNA:   3'- cuuCGUgCGCGcCGUCGUAGCGggug -5'
24868 3' -59.7 NC_005284.1 + 23278 0.67 0.408872
Target:  5'- aAGGCGCGCGgugccgauauCGGCguguaucccGGCGUCGUCgACg -3'
miRNA:   3'- cUUCGUGCGC----------GCCG---------UCGUAGCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 53578 0.67 0.407955
Target:  5'- -cGGCGCGCGCccaugccGGuCAGCAUCGUUucgUACa -3'
miRNA:   3'- cuUCGUGCGCG-------CC-GUCGUAGCGG---GUG- -5'
24868 3' -59.7 NC_005284.1 + 16119 0.67 0.399764
Target:  5'- --cGUugGCGCGGUGGCGaCGUUCGg -3'
miRNA:   3'- cuuCGugCGCGCCGUCGUaGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 10072 0.67 0.399764
Target:  5'- cGAGCggaACGCGCGGCGaCcgCGaCCGCg -3'
miRNA:   3'- cUUCG---UGCGCGCCGUcGuaGCgGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.