miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24868 3' -59.7 NC_005284.1 + 21517 1.09 0.000319
Target:  5'- aGAAGCACGCGCGGCAGCAUCGCCCACu -3'
miRNA:   3'- -CUUCGUGCGCGCCGUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 45558 0.81 0.0431
Target:  5'- --cGC-CGCGUGGC-GCGUCGCCCGCg -3'
miRNA:   3'- cuuCGuGCGCGCCGuCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 21778 0.79 0.052726
Target:  5'- aAAGCAucacCGgGCaGCAGCAUCGCCCGCu -3'
miRNA:   3'- cUUCGU----GCgCGcCGUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 21676 0.78 0.064429
Target:  5'- ---uCACGCagaGGCAGCAUCGCCCGCu -3'
miRNA:   3'- cuucGUGCGcg-CCGUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 23346 0.77 0.074075
Target:  5'- gGggGCccgGCGCGCcGCAGCggcgcacGUCGCCCGCg -3'
miRNA:   3'- -CuuCG---UGCGCGcCGUCG-------UAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 45188 0.76 0.095773
Target:  5'- uGAAGCuucgcCGcCGCGGCAGCGcgaUCGCCCuGCg -3'
miRNA:   3'- -CUUCGu----GC-GCGCCGUCGU---AGCGGG-UG- -5'
24868 3' -59.7 NC_005284.1 + 1222 0.76 0.098496
Target:  5'- uGGGCGCGCGcCGGCAGC--CGCUCAUg -3'
miRNA:   3'- cUUCGUGCGC-GCCGUCGuaGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 8904 0.76 0.101292
Target:  5'- -cGGCAaguUGCGCGGCAGCAguggcuucgCGCuCCACg -3'
miRNA:   3'- cuUCGU---GCGCGCCGUCGUa--------GCG-GGUG- -5'
24868 3' -59.7 NC_005284.1 + 33127 0.75 0.104163
Target:  5'- --cGC-CGaCGCGGCGGCAUCGUgCGCg -3'
miRNA:   3'- cuuCGuGC-GCGCCGUCGUAGCGgGUG- -5'
24868 3' -59.7 NC_005284.1 + 47234 0.75 0.109828
Target:  5'- --cGCACGCGCGGCAcGCAgaauguuUUGCCCu- -3'
miRNA:   3'- cuuCGUGCGCGCCGU-CGU-------AGCGGGug -5'
24868 3' -59.7 NC_005284.1 + 9559 0.74 0.130026
Target:  5'- cGAGGCG-GCGCaGGCAGCGcUCGCCaaaGCg -3'
miRNA:   3'- -CUUCGUgCGCG-CCGUCGU-AGCGGg--UG- -5'
24868 3' -59.7 NC_005284.1 + 15812 0.74 0.137364
Target:  5'- -cAGCGCGCagcccGCGGauCAGCAUCGCgCACg -3'
miRNA:   3'- cuUCGUGCG-----CGCC--GUCGUAGCGgGUG- -5'
24868 3' -59.7 NC_005284.1 + 52127 0.73 0.14508
Target:  5'- --cGUACGCuGUGGCAGCAUCaGCUCAa -3'
miRNA:   3'- cuuCGUGCG-CGCCGUCGUAG-CGGGUg -5'
24868 3' -59.7 NC_005284.1 + 32918 0.73 0.156972
Target:  5'- --cGCuGCGUcgacgucugauagGCGGCGGCAccaUCGCCCACg -3'
miRNA:   3'- cuuCG-UGCG-------------CGCCGUCGU---AGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 2152 0.73 0.156972
Target:  5'- aGGGCGacuucccaagaucCGUGCGGCGGCAaauUCaGCCCGCg -3'
miRNA:   3'- cUUCGU-------------GCGCGCCGUCGU---AG-CGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 33635 0.73 0.159109
Target:  5'- cGAGcCGCGCGCGGCauucaucacgcgugaAGCGcUgGCCCGCg -3'
miRNA:   3'- cUUC-GUGCGCGCCG---------------UCGU-AgCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9843 0.73 0.161709
Target:  5'- cGGGCACGCccuacGCGGCGauCAUCGCUCGCg -3'
miRNA:   3'- cUUCGUGCG-----CGCCGUc-GUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 12017 0.72 0.175288
Target:  5'- cGAGGUuguugUGCGUGGUcGCaAUCGCCCACg -3'
miRNA:   3'- -CUUCGu----GCGCGCCGuCG-UAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 14501 0.72 0.175288
Target:  5'- cGAGCagacauccgACGCGCaGCAGcCAUCGCCgACg -3'
miRNA:   3'- cUUCG---------UGCGCGcCGUC-GUAGCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 21232 0.72 0.184405
Target:  5'- gGggGCGCacauaucagcuCGCGGCGGCGgugagcuUCGCCUACa -3'
miRNA:   3'- -CuuCGUGc----------GCGCCGUCGU-------AGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.