miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24868 3' -59.7 NC_005284.1 + 10072 0.67 0.399764
Target:  5'- cGAGCggaACGCGCGGCGaCcgCGaCCGCg -3'
miRNA:   3'- cUUCG---UGCGCGCCGUcGuaGCgGGUG- -5'
24868 3' -59.7 NC_005284.1 + 23447 0.67 0.381942
Target:  5'- -cAGCGCGUGUucuGC-GCGUCGCUCGCc -3'
miRNA:   3'- cuUCGUGCGCGc--CGuCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 8275 0.67 0.381942
Target:  5'- cGAGC-UGUGCGaGCAGaUGUCGUCCGCc -3'
miRNA:   3'- cUUCGuGCGCGC-CGUC-GUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 24409 0.67 0.364657
Target:  5'- -cAGCACaCGCgGGCcgagcGCAUCGCCCucGCg -3'
miRNA:   3'- cuUCGUGcGCG-CCGu----CGUAGCGGG--UG- -5'
24868 3' -59.7 NC_005284.1 + 53651 0.67 0.364657
Target:  5'- uGGAGCACGaugGCGacGCGcCGUCGCCCGg -3'
miRNA:   3'- -CUUCGUGCg--CGC--CGUcGUAGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 39027 0.68 0.35622
Target:  5'- -cAGCAC-CGuCGuGCAGCuGUCGgCCCACa -3'
miRNA:   3'- cuUCGUGcGC-GC-CGUCG-UAGC-GGGUG- -5'
24868 3' -59.7 NC_005284.1 + 39010 0.68 0.35622
Target:  5'- --cGCAUGCGCGaGUugccacGCAUCGUCCGu -3'
miRNA:   3'- cuuCGUGCGCGC-CGu-----CGUAGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 42886 0.68 0.348745
Target:  5'- --uGCGuucUGCGCGGauuccugauagaccGCAUCGCCCGCu -3'
miRNA:   3'- cuuCGU---GCGCGCCgu------------CGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 12153 0.68 0.339761
Target:  5'- -cGGCAaGCGCGGCugucGGCucgaaCGCCUACg -3'
miRNA:   3'- cuUCGUgCGCGCCG----UCGua---GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 16437 0.68 0.330946
Target:  5'- gGAGGUgguggugGCG-GUGGCAGCAgugaaUCGCCCGa -3'
miRNA:   3'- -CUUCG-------UGCgCGCCGUCGU-----AGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 37858 0.68 0.321524
Target:  5'- ----uGCGCGCGGCAGCucgauccgaugcgagCGCUCAUa -3'
miRNA:   3'- cuucgUGCGCGCCGUCGua-------------GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 16172 0.68 0.316121
Target:  5'- uGggGCucgGCGCGUcgauggcgcugGGCGGCAUCGUgCAg -3'
miRNA:   3'- -CuuCG---UGCGCG-----------CCGUCGUAGCGgGUg -5'
24868 3' -59.7 NC_005284.1 + 10124 0.69 0.308521
Target:  5'- aAAGCGCgGCGaCGGC-GCAgacggCGCUCGCg -3'
miRNA:   3'- cUUCGUG-CGC-GCCGuCGUa----GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 26769 0.69 0.308521
Target:  5'- --uGCugGCGCuGCAaCcauGUCGCCCGCg -3'
miRNA:   3'- cuuCGugCGCGcCGUcG---UAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 41973 0.69 0.298851
Target:  5'- cGGGCGCGaaGCGGCGGCGuccaguagaacgacUccgCGCCCGCa -3'
miRNA:   3'- cUUCGUGCg-CGCCGUCGU--------------A---GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 52990 0.69 0.293742
Target:  5'- cGAGGCAauCGCGGUgGGCAUCGCguuugCCGCu -3'
miRNA:   3'- -CUUCGUgcGCGCCG-UCGUAGCG-----GGUG- -5'
24868 3' -59.7 NC_005284.1 + 53406 0.69 0.286562
Target:  5'- -cAGCACGCGCGGauCGGUccaAUCGUCCc- -3'
miRNA:   3'- cuUCGUGCGCGCC--GUCG---UAGCGGGug -5'
24868 3' -59.7 NC_005284.1 + 11239 0.69 0.279521
Target:  5'- -cAGCACGUgugucgaccaacGCGGCAGCGgcUCGCgCgGCg -3'
miRNA:   3'- cuUCGUGCG------------CGCCGUCGU--AGCG-GgUG- -5'
24868 3' -59.7 NC_005284.1 + 32810 0.69 0.279521
Target:  5'- -cGGguUGCGgGGCGGCGUCGgUUACg -3'
miRNA:   3'- cuUCguGCGCgCCGUCGUAGCgGGUG- -5'
24868 3' -59.7 NC_005284.1 + 48165 0.69 0.272619
Target:  5'- -cGGCGCGCGCuGGCgaAGUGaCGCCCGu -3'
miRNA:   3'- cuUCGUGCGCG-CCG--UCGUaGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.