miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24868 3' -59.7 NC_005284.1 + 1222 0.76 0.098496
Target:  5'- uGGGCGCGCGcCGGCAGC--CGCUCAUg -3'
miRNA:   3'- cUUCGUGCGC-GCCGUCGuaGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 2152 0.73 0.156972
Target:  5'- aGGGCGacuucccaagaucCGUGCGGCGGCAaauUCaGCCCGCg -3'
miRNA:   3'- cUUCGU-------------GCGCGCCGUCGU---AG-CGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 3523 0.7 0.246373
Target:  5'- cGAAGCACGUucuucGCGcGUGGC-UCGCUCGCc -3'
miRNA:   3'- -CUUCGUGCG-----CGC-CGUCGuAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 4477 0.71 0.222257
Target:  5'- aAAGCugGCucGCGGCGGCGguagCGCCgAa -3'
miRNA:   3'- cUUCGugCG--CGCCGUCGUa---GCGGgUg -5'
24868 3' -59.7 NC_005284.1 + 5708 0.66 0.413474
Target:  5'- --cGCACGUGgcagcucCGGCGGCGaugaacaagaaggCGCCCGCc -3'
miRNA:   3'- cuuCGUGCGC-------GCCGUCGUa------------GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 8275 0.67 0.381942
Target:  5'- cGAGC-UGUGCGaGCAGaUGUCGUCCGCc -3'
miRNA:   3'- cUUCGuGCGCGC-CGUC-GUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 8904 0.76 0.101292
Target:  5'- -cGGCAaguUGCGCGGCAGCAguggcuucgCGCuCCACg -3'
miRNA:   3'- cuUCGU---GCGCGCCGUCGUa--------GCG-GGUG- -5'
24868 3' -59.7 NC_005284.1 + 9559 0.74 0.130026
Target:  5'- cGAGGCG-GCGCaGGCAGCGcUCGCCaaaGCg -3'
miRNA:   3'- -CUUCGUgCGCG-CCGUCGU-AGCGGg--UG- -5'
24868 3' -59.7 NC_005284.1 + 9719 0.66 0.436955
Target:  5'- cGAGCGCGUaGCcGC-GC-UCGCCCGCc -3'
miRNA:   3'- cUUCGUGCG-CGcCGuCGuAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9751 0.71 0.222257
Target:  5'- cGAAGCGCGgGCGGUcgaggcgacGGCGcaaGCUCACg -3'
miRNA:   3'- -CUUCGUGCgCGCCG---------UCGUag-CGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9843 0.73 0.161709
Target:  5'- cGGGCACGCccuacGCGGCGauCAUCGCUCGCg -3'
miRNA:   3'- cUUCGUGCG-----CGCCGUc-GUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9894 0.72 0.189873
Target:  5'- aGGAGCucgaGCGCGCcgaAGCGUCGCUCGCg -3'
miRNA:   3'- -CUUCG----UGCGCGccgUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 10072 0.67 0.399764
Target:  5'- cGAGCggaACGCGCGGCGaCcgCGaCCGCg -3'
miRNA:   3'- cUUCG---UGCGCGCCGUcGuaGCgGGUG- -5'
24868 3' -59.7 NC_005284.1 + 10124 0.69 0.308521
Target:  5'- aAAGCGCgGCGaCGGC-GCAgacggCGCUCGCg -3'
miRNA:   3'- cUUCGUG-CGC-GCCGuCGUa----GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 11239 0.69 0.279521
Target:  5'- -cAGCACGUgugucgaccaacGCGGCAGCGgcUCGCgCgGCg -3'
miRNA:   3'- cuUCGUGCG------------CGCCGUCGU--AGCG-GgUG- -5'
24868 3' -59.7 NC_005284.1 + 11737 0.71 0.205513
Target:  5'- aGGGCGCGCGaaaGGaCGGCAcgcuggguUCGCCCGa -3'
miRNA:   3'- cUUCGUGCGCg--CC-GUCGU--------AGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 11891 0.71 0.222257
Target:  5'- aGGGUGCGCGCcucuCGGCAUCGUCCAUc -3'
miRNA:   3'- cUUCGUGCGCGcc--GUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 12017 0.72 0.175288
Target:  5'- cGAGGUuguugUGCGUGGUcGCaAUCGCCCACg -3'
miRNA:   3'- -CUUCGu----GCGCGCCGuCG-UAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 12153 0.68 0.339761
Target:  5'- -cGGCAaGCGCGGCugucGGCucgaaCGCCUACg -3'
miRNA:   3'- cuUCGUgCGCGCCG----UCGua---GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 14501 0.72 0.175288
Target:  5'- cGAGCagacauccgACGCGCaGCAGcCAUCGCCgACg -3'
miRNA:   3'- cUUCG---------UGCGCGcCGUC-GUAGCGGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.