miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24868 3' -59.7 NC_005284.1 + 16437 0.68 0.330946
Target:  5'- gGAGGUgguggugGCG-GUGGCAGCAgugaaUCGCCCGa -3'
miRNA:   3'- -CUUCG-------UGCgCGCCGUCGU-----AGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 19798 0.7 0.252732
Target:  5'- -cGGCA-GCGCGGCGGCAgaUCuCUCGCg -3'
miRNA:   3'- cuUCGUgCGCGCCGUCGU--AGcGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 35473 0.7 0.265854
Target:  5'- --cGCGCgGUGCGaGCAGCuUUGCUCGCa -3'
miRNA:   3'- cuuCGUG-CGCGC-CGUCGuAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 48165 0.69 0.272619
Target:  5'- -cGGCGCGCGCuGGCgaAGUGaCGCCCGu -3'
miRNA:   3'- cuUCGUGCGCG-CCG--UCGUaGCGGGUg -5'
24868 3' -59.7 NC_005284.1 + 11239 0.69 0.279521
Target:  5'- -cAGCACGUgugucgaccaacGCGGCAGCGgcUCGCgCgGCg -3'
miRNA:   3'- cuUCGUGCG------------CGCCGUCGU--AGCG-GgUG- -5'
24868 3' -59.7 NC_005284.1 + 32810 0.69 0.279521
Target:  5'- -cGGguUGCGgGGCGGCGUCGgUUACg -3'
miRNA:   3'- cuUCguGCGCgCCGUCGUAGCgGGUG- -5'
24868 3' -59.7 NC_005284.1 + 52990 0.69 0.293742
Target:  5'- cGAGGCAauCGCGGUgGGCAUCGCguuugCCGCu -3'
miRNA:   3'- -CUUCGUgcGCGCCG-UCGUAGCG-----GGUG- -5'
24868 3' -59.7 NC_005284.1 + 10124 0.69 0.308521
Target:  5'- aAAGCGCgGCGaCGGC-GCAgacggCGCUCGCg -3'
miRNA:   3'- cUUCGUG-CGC-GCCGuCGUa----GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 16172 0.68 0.316121
Target:  5'- uGggGCucgGCGCGUcgauggcgcugGGCGGCAUCGUgCAg -3'
miRNA:   3'- -CuuCG---UGCGCG-----------CCGUCGUAGCGgGUg -5'
24868 3' -59.7 NC_005284.1 + 47746 0.71 0.228091
Target:  5'- -cGGUACG-GCGGCGcGCGUaCGUCCGCg -3'
miRNA:   3'- cuUCGUGCgCGCCGU-CGUA-GCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9751 0.71 0.222257
Target:  5'- cGAAGCGCGgGCGGUcgaggcgacGGCGcaaGCUCACg -3'
miRNA:   3'- -CUUCGUGCgCGCCG---------UCGUag-CGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 4477 0.71 0.222257
Target:  5'- aAAGCugGCucGCGGCGGCGguagCGCCgAa -3'
miRNA:   3'- cUUCGugCG--CGCCGUCGUa---GCGGgUg -5'
24868 3' -59.7 NC_005284.1 + 1222 0.76 0.098496
Target:  5'- uGGGCGCGCGcCGGCAGC--CGCUCAUg -3'
miRNA:   3'- cUUCGUGCGC-GCCGUCGuaGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9559 0.74 0.130026
Target:  5'- cGAGGCG-GCGCaGGCAGCGcUCGCCaaaGCg -3'
miRNA:   3'- -CUUCGUgCGCG-CCGUCGU-AGCGGg--UG- -5'
24868 3' -59.7 NC_005284.1 + 9843 0.73 0.161709
Target:  5'- cGGGCACGCccuacGCGGCGauCAUCGCUCGCg -3'
miRNA:   3'- cUUCGUGCG-----CGCCGUc-GUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 14501 0.72 0.175288
Target:  5'- cGAGCagacauccgACGCGCaGCAGcCAUCGCCgACg -3'
miRNA:   3'- cUUCG---------UGCGCGcCGUC-GUAGCGGgUG- -5'
24868 3' -59.7 NC_005284.1 + 21232 0.72 0.184405
Target:  5'- gGggGCGCacauaucagcuCGCGGCGGCGgugagcuUCGCCUACa -3'
miRNA:   3'- -CuuCGUGc----------GCGCCGUCGU-------AGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 9894 0.72 0.189873
Target:  5'- aGGAGCucgaGCGCGCcgaAGCGUCGCUCGCg -3'
miRNA:   3'- -CUUCG----UGCGCGccgUCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 44933 0.71 0.20018
Target:  5'- --cGCAcCGCGCcucGguGUAUCGCCCGCc -3'
miRNA:   3'- cuuCGU-GCGCGc--CguCGUAGCGGGUG- -5'
24868 3' -59.7 NC_005284.1 + 11737 0.71 0.205513
Target:  5'- aGGGCGCGCGaaaGGaCGGCAcgcuggguUCGCCCGa -3'
miRNA:   3'- cUUCGUGCGCg--CC-GUCGU--------AGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.