Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 51510 | 0.69 | 0.689363 |
Target: 5'- gGGGaCACG-CGgGACGCUGA---UGGCg -3' miRNA: 3'- -CUC-GUGUaGCgCUGCGACUuugACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 9406 | 0.68 | 0.722426 |
Target: 5'- aGAGCACcUCGaCGGCaucgUGAAACUcGGCg -3' miRNA: 3'- -CUCGUGuAGC-GCUGcg--ACUUUGA-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 7009 | 0.68 | 0.744017 |
Target: 5'- uGGCGC-UCGCcGgGCUGA--CUGGCg -3' miRNA: 3'- cUCGUGuAGCGcUgCGACUuuGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 30866 | 0.68 | 0.700458 |
Target: 5'- cGGCACAUCuGCGGCaGCgc--ACUGGUc -3' miRNA: 3'- cUCGUGUAG-CGCUG-CGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 16416 | 0.68 | 0.711482 |
Target: 5'- aAGCGCAUCuaCGGCGCcaagGGAGgUGGUg -3' miRNA: 3'- cUCGUGUAGc-GCUGCGa---CUUUgACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 12630 | 0.68 | 0.733274 |
Target: 5'- aGGGCACGgcggCGauaCGACGCUGcGugUGcGCa -3' miRNA: 3'- -CUCGUGUa---GC---GCUGCGACuUugAC-CG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 10640 | 0.68 | 0.733274 |
Target: 5'- cGAGCgGCGgcgaagCGCuGCGCgaGGAACUGGUg -3' miRNA: 3'- -CUCG-UGUa-----GCGcUGCGa-CUUUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 48154 | 0.68 | 0.711482 |
Target: 5'- aGAGCcCAUUcCGGCGCgc--GCUGGCg -3' miRNA: 3'- -CUCGuGUAGcGCUGCGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 9928 | 0.67 | 0.795705 |
Target: 5'- -cGCGCAgcaGCGGCGUacggcgcuUGAGGC-GGCa -3' miRNA: 3'- cuCGUGUag-CGCUGCG--------ACUUUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 11813 | 0.67 | 0.765134 |
Target: 5'- gGAGCAgGUCGCG-CGC--GAGCgcGGCu -3' miRNA: 3'- -CUCGUgUAGCGCuGCGacUUUGa-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 8887 | 0.67 | 0.785678 |
Target: 5'- -uGCGCAUCGCG-CGC-GAcACacGGCa -3' miRNA: 3'- cuCGUGUAGCGCuGCGaCUuUGa-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 39334 | 0.67 | 0.754641 |
Target: 5'- -cGCACgAUCGCGuagcagucgugcACGCcaugGAcgAACUGGCg -3' miRNA: 3'- cuCGUG-UAGCGC------------UGCGa---CU--UUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 19329 | 0.67 | 0.764091 |
Target: 5'- -cGCACcgCGCGagauccaGCGCgacGAAcaagGCUGGCu -3' miRNA: 3'- cuCGUGuaGCGC-------UGCGa--CUU----UGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 16720 | 0.67 | 0.774456 |
Target: 5'- cGAGcCACAUCGgcaCGAUGCUGuGAUccagcgauccagaUGGCa -3' miRNA: 3'- -CUC-GUGUAGC---GCUGCGACuUUG-------------ACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 39071 | 0.67 | 0.775484 |
Target: 5'- -cGCGCGUCGacaGACGCccgUGcAugUGGUg -3' miRNA: 3'- cuCGUGUAGCg--CUGCG---ACuUugACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 28370 | 0.67 | 0.785678 |
Target: 5'- uGAGCACGUaGCGACGaggcuuuGCgGGCa -3' miRNA: 3'- -CUCGUGUAgCGCUGCgacuu--UGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 4325 | 0.67 | 0.795705 |
Target: 5'- aAGCGCAUCgGUGACGaagUGAAauccGCcGGCg -3' miRNA: 3'- cUCGUGUAG-CGCUGCg--ACUU----UGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 44884 | 0.67 | 0.795705 |
Target: 5'- cGAGCGCGagcgacgcuUCgGCG-CGCUGAGcuccuGCUGuGCg -3' miRNA: 3'- -CUCGUGU---------AG-CGCuGCGACUU-----UGAC-CG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 51729 | 0.67 | 0.795705 |
Target: 5'- aAGCGCGuguacggaaagaUCGCGGCGCgccugcgGGAAgUGGa -3' miRNA: 3'- cUCGUGU------------AGCGCUGCGa------CUUUgACCg -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 33961 | 0.67 | 0.795705 |
Target: 5'- -cGCuCGUCGgcCGGCGCUGcuGCgGGCu -3' miRNA: 3'- cuCGuGUAGC--GCUGCGACuuUGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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