miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 5' -52.7 NC_005284.1 + 23369 0.72 0.511367
Target:  5'- -cGCACGUCGCc-CGC--GAACUGGCg -3'
miRNA:   3'- cuCGUGUAGCGcuGCGacUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 718 0.72 0.511367
Target:  5'- uGGcCGCGUCGUGAuCGUUGu-GCUGGCc -3'
miRNA:   3'- cUC-GUGUAGCGCU-GCGACuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 53320 0.73 0.419335
Target:  5'- aAGCGCGcagacuuaaUCGC-ACGCUGcuGCUGGCu -3'
miRNA:   3'- cUCGUGU---------AGCGcUGCGACuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 14608 0.74 0.381769
Target:  5'- gGAGUugGUCGCGACGC----ACgUGGCg -3'
miRNA:   3'- -CUCGugUAGCGCUGCGacuuUG-ACCG- -5'
24870 5' -52.7 NC_005284.1 + 19329 0.67 0.764091
Target:  5'- -cGCACcgCGCGagauccaGCGCgacGAAcaagGCUGGCu -3'
miRNA:   3'- cuCGUGuaGCGC-------UGCGa--CUU----UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 16720 0.67 0.774456
Target:  5'- cGAGcCACAUCGgcaCGAUGCUGuGAUccagcgauccagaUGGCa -3'
miRNA:   3'- -CUC-GUGUAGC---GCUGCGACuUUG-------------ACCG- -5'
24870 5' -52.7 NC_005284.1 + 39071 0.67 0.775484
Target:  5'- -cGCGCGUCGacaGACGCccgUGcAugUGGUg -3'
miRNA:   3'- cuCGUGUAGCg--CUGCG---ACuUugACCG- -5'
24870 5' -52.7 NC_005284.1 + 44884 0.67 0.795705
Target:  5'- cGAGCGCGagcgacgcuUCgGCG-CGCUGAGcuccuGCUGuGCg -3'
miRNA:   3'- -CUCGUGU---------AG-CGCuGCGACUU-----UGAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 14896 0.66 0.824666
Target:  5'- cAGCGCAaaCGCGA-GCcgUGAGACgugGGCg -3'
miRNA:   3'- cUCGUGUa-GCGCUgCG--ACUUUGa--CCG- -5'
24870 5' -52.7 NC_005284.1 + 17684 0.66 0.824666
Target:  5'- -cGCGCGaucgugCGCGACGCccUGAAucucGCcGGCg -3'
miRNA:   3'- cuCGUGUa-----GCGCUGCG--ACUU----UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 29845 0.66 0.824666
Target:  5'- gGAGCGCAugaUCgGCGACGgaGGGAuCUGcGUc -3'
miRNA:   3'- -CUCGUGU---AG-CGCUGCgaCUUU-GAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 33635 0.66 0.842931
Target:  5'- cGAGcCGCG-CGCGgcauucaucACGCgUGAAgcGCUGGCc -3'
miRNA:   3'- -CUC-GUGUaGCGC---------UGCG-ACUU--UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 916 0.66 0.851719
Target:  5'- -cGcCGCAUCcCGGcCGCUGugcucgaugcuGAACUGGCg -3'
miRNA:   3'- cuC-GUGUAGcGCU-GCGAC-----------UUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 23048 0.66 0.851719
Target:  5'- aGAGCGCuAUCGCuGGCuGCgGGAGCgagcaUGGUa -3'
miRNA:   3'- -CUCGUG-UAGCG-CUG-CGaCUUUG-----ACCG- -5'
24870 5' -52.7 NC_005284.1 + 20510 1.12 0.001018
Target:  5'- cGAGCACAUCGCGACGCUGAAACUGGCu -3'
miRNA:   3'- -CUCGUGUAGCGCUGCGACUUUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.