Results 21 - 40 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 47707 | 0.66 | 0.805553 |
Target: 5'- aGGGCACGcgcgcUCGCGuGCGCaGAAggccguGCUcGGCg -3' miRNA: 3'- -CUCGUGU-----AGCGC-UGCGaCUU------UGA-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 23161 | 0.66 | 0.805553 |
Target: 5'- gGGGCACcgaucGUCGCGGCGCguuccgcucgugUGA---UGGCu -3' miRNA: 3'- -CUCGUG-----UAGCGCUGCG------------ACUuugACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 17896 | 0.72 | 0.479654 |
Target: 5'- cGGGCGCAUC-CG-CGCaGcgGCUGGCg -3' miRNA: 3'- -CUCGUGUAGcGCuGCGaCuuUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 48320 | 0.66 | 0.805553 |
Target: 5'- cGAGCGCuAUCcggaaggcgGCGGCGagaUGAuucucgcGCUGGCa -3' miRNA: 3'- -CUCGUG-UAG---------CGCUGCg--ACUu------UGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 9928 | 0.67 | 0.795705 |
Target: 5'- -cGCGCAgcaGCGGCGUacggcgcuUGAGGC-GGCa -3' miRNA: 3'- cuCGUGUag-CGCUGCG--------ACUUUGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 4325 | 0.67 | 0.795705 |
Target: 5'- aAGCGCAUCgGUGACGaagUGAAauccGCcGGCg -3' miRNA: 3'- cUCGUGUAG-CGCUGCg--ACUU----UGaCCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 11567 | 0.73 | 0.448935 |
Target: 5'- gGAGCGCAgugCGCagaucGACGC-GGAGCUcGGCg -3' miRNA: 3'- -CUCGUGUa--GCG-----CUGCGaCUUUGA-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 17732 | 0.71 | 0.523213 |
Target: 5'- -uGCACGUCGCaGGCGCaggcgcaccggcucgGgcGCUGGCu -3' miRNA: 3'- cuCGUGUAGCG-CUGCGa--------------CuuUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 10235 | 0.71 | 0.565986 |
Target: 5'- uGGGCACGguggCGCuuGGgGCUGccgcGAACUGGCu -3' miRNA: 3'- -CUCGUGUa---GCG--CUgCGAC----UUUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 14523 | 0.69 | 0.644525 |
Target: 5'- cAGC-CAUCGcCGACGCUGcgGgUGGg -3' miRNA: 3'- cUCGuGUAGC-GCUGCGACuuUgACCg -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 50249 | 0.69 | 0.667013 |
Target: 5'- -cGCGaacgGCGACGCUGAAGCgucagaaGGCg -3' miRNA: 3'- cuCGUguagCGCUGCGACUUUGa------CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 11843 | 0.69 | 0.667013 |
Target: 5'- cGAGCAgCGgcUCGCGuuGCaGGccGACUGGCg -3' miRNA: 3'- -CUCGU-GU--AGCGCugCGaCU--UUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 51510 | 0.69 | 0.689363 |
Target: 5'- gGGGaCACG-CGgGACGCUGA---UGGCg -3' miRNA: 3'- -CUC-GUGUaGCgCUGCGACUuugACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 30866 | 0.68 | 0.700458 |
Target: 5'- cGGCACAUCuGCGGCaGCgc--ACUGGUc -3' miRNA: 3'- cUCGUGUAG-CGCUG-CGacuuUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 12630 | 0.68 | 0.733274 |
Target: 5'- aGGGCACGgcggCGauaCGACGCUGcGugUGcGCa -3' miRNA: 3'- -CUCGUGUa---GC---GCUGCGACuUugAC-CG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 10640 | 0.68 | 0.733274 |
Target: 5'- cGAGCgGCGgcgaagCGCuGCGCgaGGAACUGGUg -3' miRNA: 3'- -CUCG-UGUa-----GCGcUGCGa-CUUUGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 7009 | 0.68 | 0.744017 |
Target: 5'- uGGCGC-UCGCcGgGCUGA--CUGGCg -3' miRNA: 3'- cUCGUGuAGCGcUgCGACUuuGACCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 11813 | 0.67 | 0.765134 |
Target: 5'- gGAGCAgGUCGCG-CGC--GAGCgcGGCu -3' miRNA: 3'- -CUCGUgUAGCGCuGCGacUUUGa-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 8887 | 0.67 | 0.785678 |
Target: 5'- -uGCGCAUCGCG-CGC-GAcACacGGCa -3' miRNA: 3'- cuCGUGUAGCGCuGCGaCUuUGa-CCG- -5' |
|||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 28370 | 0.67 | 0.785678 |
Target: 5'- uGAGCACGUaGCGACGaggcuuuGCgGGCa -3' miRNA: 3'- -CUCGUGUAgCGCUGCgacuu--UGaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home