miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24871 5' -56.2 NC_005284.1 + 19121 0.66 0.627155
Target:  5'- aUGaGACGACacCGCgCGCgAACGGCAUc -3'
miRNA:   3'- aAC-CUGCUGauGUGgGCG-UUGCCGUA- -5'
24871 5' -56.2 NC_005284.1 + 5389 0.66 0.604868
Target:  5'- -cGGAguuCGGCUGCuuGCCCGU-GCGGCGc -3'
miRNA:   3'- aaCCU---GCUGAUG--UGGGCGuUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 33108 0.66 0.582677
Target:  5'- gUUGGuCGACggcggcCACCgccgaCGCGGCGGCAUc -3'
miRNA:   3'- -AACCuGCUGau----GUGG-----GCGUUGCCGUA- -5'
24871 5' -56.2 NC_005284.1 + 19924 0.66 0.582677
Target:  5'- aUGGugGuu--CAgCCGCGACGGUAa -3'
miRNA:   3'- aACCugCugauGUgGGCGUUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 44115 0.67 0.560655
Target:  5'- gUGu-CGAUcGCGCCCGCGGCGcGCAc -3'
miRNA:   3'- aACcuGCUGaUGUGGGCGUUGC-CGUa -5'
24871 5' -56.2 NC_005284.1 + 25544 0.67 0.560655
Target:  5'- aUGGA-GAUUACGCCgGCAAUGGa-- -3'
miRNA:   3'- aACCUgCUGAUGUGGgCGUUGCCgua -5'
24871 5' -56.2 NC_005284.1 + 26052 0.67 0.538868
Target:  5'- -cGGAuCGACUucaGCCCGCGAUcugaagGGCAa -3'
miRNA:   3'- aaCCU-GCUGAug-UGGGCGUUG------CCGUa -5'
24871 5' -56.2 NC_005284.1 + 17888 0.67 0.517377
Target:  5'- -cGGAuCGGCgggcGCAUCCGCGcaGCGGCu- -3'
miRNA:   3'- aaCCU-GCUGa---UGUGGGCGU--UGCCGua -5'
24871 5' -56.2 NC_005284.1 + 21233 0.68 0.50676
Target:  5'- -gGGGCGcACaUAUcaGCUCGCGGCGGCGg -3'
miRNA:   3'- aaCCUGC-UG-AUG--UGGGCGUUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 28593 0.68 0.475495
Target:  5'- -cGGACGAUaACGCCgGCAccguaaucaccaAUGGCAa -3'
miRNA:   3'- aaCCUGCUGaUGUGGgCGU------------UGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 2152 0.68 0.475495
Target:  5'- -aGGGCGACUu--CCCaagauccguGCGGCGGCAa -3'
miRNA:   3'- aaCCUGCUGAuguGGG---------CGUUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 12965 0.69 0.445222
Target:  5'- cUUGGGCGA--GCACCCaGCGgaagugGCGGCGa -3'
miRNA:   3'- -AACCUGCUgaUGUGGG-CGU------UGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 42764 0.69 0.442254
Target:  5'- gUGGGCGAUUGCgaccacgcacaacaACCuCGCGcCGGCAUu -3'
miRNA:   3'- aACCUGCUGAUG--------------UGG-GCGUuGCCGUA- -5'
24871 5' -56.2 NC_005284.1 + 32981 0.69 0.435372
Target:  5'- -aGGGCGGCggucacuCGCuCCGCAGCGGgCGa -3'
miRNA:   3'- aaCCUGCUGau-----GUG-GGCGUUGCC-GUa -5'
24871 5' -56.2 NC_005284.1 + 29412 0.69 0.405661
Target:  5'- aUGGaACGACUaugggggGCGgCgGCAACGGCAa -3'
miRNA:   3'- aACC-UGCUGA-------UGUgGgCGUUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 12676 0.7 0.388092
Target:  5'- -gGcGACGGCUACACCCaGCGggccgcggACGGCc- -3'
miRNA:   3'- aaC-CUGCUGAUGUGGG-CGU--------UGCCGua -5'
24871 5' -56.2 NC_005284.1 + 25176 0.7 0.379049
Target:  5'- -aGGACGACUACGCaCGCAuugcCGGUu- -3'
miRNA:   3'- aaCCUGCUGAUGUGgGCGUu---GCCGua -5'
24871 5' -56.2 NC_005284.1 + 23343 0.71 0.344313
Target:  5'- aUUGGG-GGCccgGCGCgCCGCAGCGGCGc -3'
miRNA:   3'- -AACCUgCUGa--UGUG-GGCGUUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 31431 0.71 0.344313
Target:  5'- -cGGGCGACgUGCG-CCGCuGCGGCGc -3'
miRNA:   3'- aaCCUGCUG-AUGUgGGCGuUGCCGUa -5'
24871 5' -56.2 NC_005284.1 + 8092 0.71 0.311926
Target:  5'- -cGGACGACgaugcaaccGCGgUCGCGGCGGCGUu -3'
miRNA:   3'- aaCCUGCUGa--------UGUgGGCGUUGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.