Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24871 | 5' | -56.2 | NC_005284.1 | + | 20256 | 1.03 | 0.001797 |
Target: 5'- gUUGGACGACUACACCCGCAACGGCAUc -3' miRNA: 3'- -AACCUGCUGAUGUGGGCGUUGCCGUA- -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 9234 | 0.82 | 0.060562 |
Target: 5'- -cGGGCGAC-GCGCCaCGCGGCGGCAUa -3' miRNA: 3'- aaCCUGCUGaUGUGG-GCGUUGCCGUA- -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 323 | 0.81 | 0.070122 |
Target: 5'- -aGGACGAUUugACUCGCAACGGCc- -3' miRNA: 3'- aaCCUGCUGAugUGGGCGUUGCCGua -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 9591 | 0.77 | 0.13587 |
Target: 5'- -aGGGCGAUcgcGCugCCGCGGCGGCGa -3' miRNA: 3'- aaCCUGCUGa--UGugGGCGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 8440 | 0.75 | 0.179436 |
Target: 5'- aUGGucCGGCga-GCCCGCGACGGCGg -3' miRNA: 3'- aACCu-GCUGaugUGGGCGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 37055 | 0.72 | 0.267774 |
Target: 5'- -cGGuGCGcCUGCGCCUGCGACGuGCAg -3' miRNA: 3'- aaCC-UGCuGAUGUGGGCGUUGC-CGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 8092 | 0.71 | 0.311926 |
Target: 5'- -cGGACGACgaugcaaccGCGgUCGCGGCGGCGUu -3' miRNA: 3'- aaCCUGCUGa--------UGUgGGCGUUGCCGUA- -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 23343 | 0.71 | 0.344313 |
Target: 5'- aUUGGG-GGCccgGCGCgCCGCAGCGGCGc -3' miRNA: 3'- -AACCUgCUGa--UGUG-GGCGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 31431 | 0.71 | 0.344313 |
Target: 5'- -cGGGCGACgUGCG-CCGCuGCGGCGc -3' miRNA: 3'- aaCCUGCUG-AUGUgGGCGuUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 25176 | 0.7 | 0.379049 |
Target: 5'- -aGGACGACUACGCaCGCAuugcCGGUu- -3' miRNA: 3'- aaCCUGCUGAUGUGgGCGUu---GCCGua -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 12676 | 0.7 | 0.388092 |
Target: 5'- -gGcGACGGCUACACCCaGCGggccgcggACGGCc- -3' miRNA: 3'- aaC-CUGCUGAUGUGGG-CGU--------UGCCGua -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 29412 | 0.69 | 0.405661 |
Target: 5'- aUGGaACGACUaugggggGCGgCgGCAACGGCAa -3' miRNA: 3'- aACC-UGCUGA-------UGUgGgCGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 32981 | 0.69 | 0.435372 |
Target: 5'- -aGGGCGGCggucacuCGCuCCGCAGCGGgCGa -3' miRNA: 3'- aaCCUGCUGau-----GUG-GGCGUUGCC-GUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 42764 | 0.69 | 0.442254 |
Target: 5'- gUGGGCGAUUGCgaccacgcacaacaACCuCGCGcCGGCAUu -3' miRNA: 3'- aACCUGCUGAUG--------------UGG-GCGUuGCCGUA- -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 12965 | 0.69 | 0.445222 |
Target: 5'- cUUGGGCGA--GCACCCaGCGgaagugGCGGCGa -3' miRNA: 3'- -AACCUGCUgaUGUGGG-CGU------UGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 28593 | 0.68 | 0.475495 |
Target: 5'- -cGGACGAUaACGCCgGCAccguaaucaccaAUGGCAa -3' miRNA: 3'- aaCCUGCUGaUGUGGgCGU------------UGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 2152 | 0.68 | 0.475495 |
Target: 5'- -aGGGCGACUu--CCCaagauccguGCGGCGGCAa -3' miRNA: 3'- aaCCUGCUGAuguGGG---------CGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 21233 | 0.68 | 0.50676 |
Target: 5'- -gGGGCGcACaUAUcaGCUCGCGGCGGCGg -3' miRNA: 3'- aaCCUGC-UG-AUG--UGGGCGUUGCCGUa -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 17888 | 0.67 | 0.517377 |
Target: 5'- -cGGAuCGGCgggcGCAUCCGCGcaGCGGCu- -3' miRNA: 3'- aaCCU-GCUGa---UGUGGGCGU--UGCCGua -5' |
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24871 | 5' | -56.2 | NC_005284.1 | + | 26052 | 0.67 | 0.538868 |
Target: 5'- -cGGAuCGACUucaGCCCGCGAUcugaagGGCAa -3' miRNA: 3'- aaCCU-GCUGAug-UGGGCGUUG------CCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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