Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24873 | 3' | -51.1 | NC_005284.1 | + | 27751 | 0.72 | 0.534026 |
Target: 5'- cGAAaCGUcUGGCAUCGAAUCGGCc-- -3' miRNA: 3'- -UUUcGCAaGCCGUAGCUUAGCCGuaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 31622 | 0.67 | 0.832668 |
Target: 5'- --uGCGggCGGCGUCGAG--GGCGc- -3' miRNA: 3'- uuuCGCaaGCCGUAGCUUagCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 23582 | 0.67 | 0.823128 |
Target: 5'- cGGAGCGggucgagCGGUucAUCGAcgCGGCGg- -3' miRNA: 3'- -UUUCGCaa-----GCCG--UAGCUuaGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 9938 | 0.68 | 0.772328 |
Target: 5'- -cGGCGUaCGGCGcUUGAggCGGCAg- -3' miRNA: 3'- uuUCGCAaGCCGU-AGCUuaGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 21905 | 0.68 | 0.761635 |
Target: 5'- --cGCGUuuUCGGCGUCGc--CGGCGa- -3' miRNA: 3'- uuuCGCA--AGCCGUAGCuuaGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 35328 | 0.68 | 0.761635 |
Target: 5'- -uAGCuUUCGGCAUCGAcGUCGGa--- -3' miRNA: 3'- uuUCGcAAGCCGUAGCU-UAGCCguaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 47521 | 0.69 | 0.733178 |
Target: 5'- --cGUGUUCGGCGUCGAGgugccgaccgugcgcUCcGCAUUg -3' miRNA: 3'- uuuCGCAAGCCGUAGCUU---------------AGcCGUAA- -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 23277 | 0.69 | 0.728726 |
Target: 5'- uAAGGCGcgCGGUGcCGAuAUCGGCGUg -3' miRNA: 3'- -UUUCGCaaGCCGUaGCU-UAGCCGUAa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 32815 | 0.69 | 0.717525 |
Target: 5'- --uGCGgggCGGCGUCGGuuaCGGCAa- -3' miRNA: 3'- uuuCGCaa-GCCGUAGCUua-GCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 6795 | 0.7 | 0.660376 |
Target: 5'- -cGGCGUUUGauGCGUCGA-UCGGCGa- -3' miRNA: 3'- uuUCGCAAGC--CGUAGCUuAGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 47717 | 0.7 | 0.660376 |
Target: 5'- cAAGcCGaUCGGCGUCGGugaacGUCGGCGc- -3' miRNA: 3'- uUUC-GCaAGCCGUAGCU-----UAGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 11262 | 0.68 | 0.78286 |
Target: 5'- --cGCGcuaUCGGCAUCGAAUCacaGCAg- -3' miRNA: 3'- uuuCGCa--AGCCGUAGCUUAGc--CGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 37813 | 0.67 | 0.803392 |
Target: 5'- --cGCGUUCGGCGU-GAugCGGCGc- -3' miRNA: 3'- uuuCGCAAGCCGUAgCUuaGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 36733 | 0.67 | 0.811387 |
Target: 5'- -cAGCGcccgccaccggaUCGGCGUCGAAgcgcUCGGCGa- -3' miRNA: 3'- uuUCGCa-----------AGCCGUAGCUU----AGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 50284 | 0.67 | 0.823128 |
Target: 5'- gAGGGUcUUCGGCGuuUCGAGuUCGGCGc- -3' miRNA: 3'- -UUUCGcAAGCCGU--AGCUU-AGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 33161 | 0.67 | 0.832668 |
Target: 5'- --cGCuGcUCGGCGUCGAGcgCGGCGc- -3' miRNA: 3'- uuuCG-CaAGCCGUAGCUUa-GCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 36841 | 0.66 | 0.868387 |
Target: 5'- uGAAGCGaucgcCGGCggCGAuuGUCGGCGc- -3' miRNA: 3'- -UUUCGCaa---GCCGuaGCU--UAGCCGUaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 40181 | 0.66 | 0.884649 |
Target: 5'- cGAGCGUUCGGCGcCGGAacacuuUCGcGCc-- -3' miRNA: 3'- uUUCGCAAGCCGUaGCUU------AGC-CGuaa -5' |
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24873 | 3' | -51.1 | NC_005284.1 | + | 19422 | 1.02 | 0.005765 |
Target: 5'- uAAAGCGUUCGGCAUCGAAUCGGCAUUc -3' miRNA: 3'- -UUUCGCAAGCCGUAGCUUAGCCGUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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