miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24873 5' -51.1 NC_005284.1 + 677 0.7 0.752914
Target:  5'- aGGAuuUCCGAUGgaaguUCGAU-CCGGAGGCg -3'
miRNA:   3'- -CCUu-AGGCUGC-----AGCUAcGGCUUUCGa -5'
24873 5' -51.1 NC_005284.1 + 1396 0.68 0.858549
Target:  5'- cGGAGUUCGACGUCGcUGgcauCCGcgcacAGCUa -3'
miRNA:   3'- -CCUUAGGCUGCAGCuAC----GGCuu---UCGA- -5'
24873 5' -51.1 NC_005284.1 + 7478 0.67 0.890275
Target:  5'- aGGAAUCCGAgcUCGGcuUGCcCGAuccGGGCg -3'
miRNA:   3'- -CCUUAGGCUgcAGCU--ACG-GCU---UUCGa -5'
24873 5' -51.1 NC_005284.1 + 9174 0.68 0.849114
Target:  5'- aGAGUUCGGCGcagcucaaaUCGAUgGCCGAagagggaAAGCUg -3'
miRNA:   3'- cCUUAGGCUGC---------AGCUA-CGGCU-------UUCGA- -5'
24873 5' -51.1 NC_005284.1 + 9208 0.7 0.720762
Target:  5'- -uGAUCaGGCGUCGAUaGCCGAGuGCg -3'
miRNA:   3'- ccUUAGgCUGCAGCUA-CGGCUUuCGa -5'
24873 5' -51.1 NC_005284.1 + 10502 0.67 0.882738
Target:  5'- --cGUCgGugGUCucgGAUGCCGAucAGGCa -3'
miRNA:   3'- ccuUAGgCugCAG---CUACGGCU--UUCGa -5'
24873 5' -51.1 NC_005284.1 + 10860 0.7 0.763391
Target:  5'- aGAAUCCGACGucaUCGGUaugacggcccGCCaGAAGGCc -3'
miRNA:   3'- cCUUAGGCUGC---AGCUA----------CGG-CUUUCGa -5'
24873 5' -51.1 NC_005284.1 + 12108 0.73 0.542879
Target:  5'- uGGGAUUCGGCGgugucucUGAUGCCGucGGCg -3'
miRNA:   3'- -CCUUAGGCUGCa------GCUACGGCuuUCGa -5'
24873 5' -51.1 NC_005284.1 + 14663 0.68 0.861907
Target:  5'- cGGcAAUCCGACGgCGGacccgaacgaagaaaUGCCGAcgcAGCa -3'
miRNA:   3'- -CC-UUAGGCUGCaGCU---------------ACGGCUu--UCGa -5'
24873 5' -51.1 NC_005284.1 + 16663 0.66 0.904523
Target:  5'- cGGGuuuUCCGGcCGUCGAgcgugagGCCGGcgucGGCg -3'
miRNA:   3'- -CCUu--AGGCU-GCAGCUa------CGGCUu---UCGa -5'
24873 5' -51.1 NC_005284.1 + 19457 1.11 0.002229
Target:  5'- uGGAAUCCGACGUCGAUGCCGAAAGCUa -3'
miRNA:   3'- -CCUUAGGCUGCAGCUACGGCUUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 19519 0.69 0.813437
Target:  5'- uGGAcgCCGACaccaccCGAUGgCGAAGGUUg -3'
miRNA:   3'- -CCUuaGGCUGca----GCUACgGCUUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 19956 0.7 0.763391
Target:  5'- ----aUCGACGcCGGUGCCGGGcuGGCUu -3'
miRNA:   3'- ccuuaGGCUGCaGCUACGGCUU--UCGA- -5'
24873 5' -51.1 NC_005284.1 + 20026 0.66 0.904523
Target:  5'- uGGAuAUCCgGACaUCGc-GCCGGAAGCa -3'
miRNA:   3'- -CCU-UAGG-CUGcAGCuaCGGCUUUCGa -5'
24873 5' -51.1 NC_005284.1 + 22871 0.69 0.773728
Target:  5'- gGGAAg--GGCGUCGAgcGCCGcGAGCUg -3'
miRNA:   3'- -CCUUaggCUGCAGCUa-CGGCuUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 23996 0.66 0.923778
Target:  5'- gGGAcgAUCCGGacuauCGUCGGUG-CGAucGCa -3'
miRNA:   3'- -CCU--UAGGCU-----GCAGCUACgGCUuuCGa -5'
24873 5' -51.1 NC_005284.1 + 24550 0.67 0.897538
Target:  5'- cGGAcaauAUCCGGCcagacCGAcGCCGAcGGCUa -3'
miRNA:   3'- -CCU----UAGGCUGca---GCUaCGGCUuUCGA- -5'
24873 5' -51.1 NC_005284.1 + 27955 0.69 0.772701
Target:  5'- gGGAAgaguggcUCaCGACGUCGAaUGCUGAAGccGCUc -3'
miRNA:   3'- -CCUU-------AG-GCUGCAGCU-ACGGCUUU--CGA- -5'
24873 5' -51.1 NC_005284.1 + 29375 0.7 0.763391
Target:  5'- -uGAUCCauauucGCGUCGAUGCUagGAAGGCUc -3'
miRNA:   3'- ccUUAGGc-----UGCAGCUACGG--CUUUCGA- -5'
24873 5' -51.1 NC_005284.1 + 35362 0.73 0.587062
Target:  5'- uGAAUgCCGAU-UCGAUGCCGAAcGCUu -3'
miRNA:   3'- cCUUA-GGCUGcAGCUACGGCUUuCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.