Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24874 | 3' | -50.5 | NC_005284.1 | + | 38038 | 0.71 | 0.670467 |
Target: 5'- gCAUCUUCAUUGCCaUCUgGAucgcuggaucacaGCAUCGu -3' miRNA: 3'- -GUAGAGGUGACGGaAGAgCU-------------UGUAGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 39924 | 0.66 | 0.935031 |
Target: 5'- gGUCggCUGCUGCgUUUUCGAGCcacUCGa -3' miRNA: 3'- gUAGa-GGUGACGgAAGAGCUUGu--AGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 15575 | 0.66 | 0.935031 |
Target: 5'- cUAUCaggaCGCUgGCUUUCUCG-ACGUCGg -3' miRNA: 3'- -GUAGag--GUGA-CGGAAGAGCuUGUAGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 35229 | 0.66 | 0.929383 |
Target: 5'- cCGUCUUCGgUGUCguagaUCUCGAGCAg-- -3' miRNA: 3'- -GUAGAGGUgACGGa----AGAGCUUGUagc -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 36338 | 0.66 | 0.923437 |
Target: 5'- -uUCUUCAaucGCCUUCUCGAucGCGcCGg -3' miRNA: 3'- guAGAGGUga-CGGAAGAGCU--UGUaGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 26737 | 0.7 | 0.727476 |
Target: 5'- aCGUUUCU-CUGCCUcagCUCGAgcuGCGUCGa -3' miRNA: 3'- -GUAGAGGuGACGGAa--GAGCU---UGUAGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 6461 | 0.66 | 0.935031 |
Target: 5'- uCAUCUcgCCGCcGCCUUC-CGGAUAgcgcUCGa -3' miRNA: 3'- -GUAGA--GGUGaCGGAAGaGCUUGU----AGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 13868 | 0.66 | 0.929383 |
Target: 5'- aAUUgaaCAC-GCCUUCUCGAACAagaauUCGc -3' miRNA: 3'- gUAGag-GUGaCGGAAGAGCUUGU-----AGC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 43471 | 0.66 | 0.91066 |
Target: 5'- ---aUCCGCUGCCggaugUUgUCGAGCAUgCGc -3' miRNA: 3'- guagAGGUGACGG-----AAgAGCUUGUA-GC- -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 52974 | 0.67 | 0.881622 |
Target: 5'- gAUCUCCGC-GCCauccgUUUCGAGCAa-- -3' miRNA: 3'- gUAGAGGUGaCGGa----AGAGCUUGUagc -5' |
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24874 | 3' | -50.5 | NC_005284.1 | + | 18413 | 1.09 | 0.003093 |
Target: 5'- cCAUCUCCACUGCCUUCUCGAACAUCGu -3' miRNA: 3'- -GUAGAGGUGACGGAAGAGCUUGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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