miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24874 5' -50.9 NC_005284.1 + 18447 1.13 0.001749
Target:  5'- cGGCGCGAUCGAGAAGGCGAUUGAAGAa -3'
miRNA:   3'- -CCGCGCUAGCUCUUCCGCUAACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 49260 0.78 0.328164
Target:  5'- cGCGCGAUC-AGGAGGCGAcgUGAcGAa -3'
miRNA:   3'- cCGCGCUAGcUCUUCCGCUa-ACUuCU- -5'
24874 5' -50.9 NC_005284.1 + 36364 0.76 0.398476
Target:  5'- cGGcCGCGAcgauguUCGAGAAGGCag-UGGAGAu -3'
miRNA:   3'- -CC-GCGCU------AGCUCUUCCGcuaACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 15058 0.75 0.477724
Target:  5'- uGGaCGaacaGAUCaAGAAGGCGAUUGAGGc -3'
miRNA:   3'- -CC-GCg---CUAGcUCUUCCGCUAACUUCu -5'
24874 5' -50.9 NC_005284.1 + 19027 0.74 0.520159
Target:  5'- aGGCgGCGAUCGccGAGGGCGAUaUGgcGGu -3'
miRNA:   3'- -CCG-CGCUAGCu-CUUCCGCUA-ACuuCU- -5'
24874 5' -50.9 NC_005284.1 + 11087 0.73 0.552928
Target:  5'- --gGUGGUCGcGAAGGCGcUUGAGGAg -3'
miRNA:   3'- ccgCGCUAGCuCUUCCGCuAACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 17716 0.73 0.575116
Target:  5'- cGGCGCG-UCGAu--GGCGGUcGAGGAc -3'
miRNA:   3'- -CCGCGCuAGCUcuuCCGCUAaCUUCU- -5'
24874 5' -50.9 NC_005284.1 + 6851 0.73 0.5975
Target:  5'- cGCGCGAUCGAucgugugcucgGAGGGCGGcggUGAGc- -3'
miRNA:   3'- cCGCGCUAGCU-----------CUUCCGCUa--ACUUcu -5'
24874 5' -50.9 NC_005284.1 + 9103 0.71 0.698566
Target:  5'- cGCGCGGUCGuGAAGGCGu------- -3'
miRNA:   3'- cCGCGCUAGCuCUUCCGCuaacuucu -5'
24874 5' -50.9 NC_005284.1 + 49143 0.7 0.735772
Target:  5'- aGGCGCGcGUCGucaAGGcggacgggcccggcgAGGCGAUgGAGGAa -3'
miRNA:   3'- -CCGCGC-UAGC---UCU---------------UCCGCUAaCUUCU- -5'
24874 5' -50.9 NC_005284.1 + 49492 0.7 0.763396
Target:  5'- -cCGCcAUCGAGAAGGCGccgacGAGGAa -3'
miRNA:   3'- ccGCGcUAGCUCUUCCGCuaa--CUUCU- -5'
24874 5' -50.9 NC_005284.1 + 40911 0.69 0.78299
Target:  5'- cGUGCGAaucuuguUCGAGAAGGCGuguucaauUUGAAc- -3'
miRNA:   3'- cCGCGCU-------AGCUCUUCCGCu-------AACUUcu -5'
24874 5' -50.9 NC_005284.1 + 1844 0.69 0.794069
Target:  5'- -uCGCGAcauucUCGAGGAGGCGAagGAugcGAa -3'
miRNA:   3'- ccGCGCU-----AGCUCUUCCGCUaaCUu--CU- -5'
24874 5' -50.9 NC_005284.1 + 45964 0.69 0.794069
Target:  5'- cGCGUGA-CGAuccGAAGGCGAUUGcucAGGu -3'
miRNA:   3'- cCGCGCUaGCU---CUUCCGCUAACu--UCU- -5'
24874 5' -50.9 NC_005284.1 + 47784 0.69 0.81365
Target:  5'- aGGCgGCGcUCGcGGAGGCGAcgGgcGAg -3'
miRNA:   3'- -CCG-CGCuAGCuCUUCCGCUaaCuuCU- -5'
24874 5' -50.9 NC_005284.1 + 40381 0.68 0.841496
Target:  5'- cGGUGCag-CGAGcAAGGCugcgguaugGAUUGGAGAa -3'
miRNA:   3'- -CCGCGcuaGCUC-UUCCG---------CUAACUUCU- -5'
24874 5' -50.9 NC_005284.1 + 19391 0.68 0.850329
Target:  5'- cGcCGUGAUCGAcGAGGGCGGUgc-AGGc -3'
miRNA:   3'- cC-GCGCUAGCU-CUUCCGCUAacuUCU- -5'
24874 5' -50.9 NC_005284.1 + 6814 0.68 0.858922
Target:  5'- cGGCGaGGcCGAGggGGCGAUUc---- -3'
miRNA:   3'- -CCGCgCUaGCUCuuCCGCUAAcuucu -5'
24874 5' -50.9 NC_005284.1 + 10683 0.67 0.867266
Target:  5'- gGGCGCGAUCGAcacGGCGGg------ -3'
miRNA:   3'- -CCGCGCUAGCUcuuCCGCUaacuucu -5'
24874 5' -50.9 NC_005284.1 + 34020 0.67 0.875354
Target:  5'- uGCGCGuUCGA---GGCGGUcGAGGAg -3'
miRNA:   3'- cCGCGCuAGCUcuuCCGCUAaCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.