miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24875 5' -58.2 NC_005284.1 + 31631 0.65 0.59992
Target:  5'- -cGcCGCGACGaucggugcCCCUGAAUacgucaacuugaUCGCUGGa -3'
miRNA:   3'- caC-GCGCUGC--------GGGACUUAg-----------AGCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 43946 0.66 0.591377
Target:  5'- cUGCGCGGCGaCgaGAG-CUUGCgGGa -3'
miRNA:   3'- cACGCGCUGCgGgaCUUaGAGCGgCC- -5'
24875 5' -58.2 NC_005284.1 + 49344 0.66 0.570119
Target:  5'- cGUGCGCGACGaCCgaacuAUCggucgcagcuUCGCCGa -3'
miRNA:   3'- -CACGCGCUGCgGGacu--UAG----------AGCGGCc -5'
24875 5' -58.2 NC_005284.1 + 49903 0.66 0.559559
Target:  5'- cUGaCGCGACGCCUUGAacagaugugcgAUCgugCGaaCCGGc -3'
miRNA:   3'- cAC-GCGCUGCGGGACU-----------UAGa--GC--GGCC- -5'
24875 5' -58.2 NC_005284.1 + 30925 0.66 0.549054
Target:  5'- -gGCG-GGCGCCgUGGcgCUuucgcCGCCGGc -3'
miRNA:   3'- caCGCgCUGCGGgACUuaGA-----GCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 16494 0.66 0.549054
Target:  5'- -cGCGCGAaggUGCUCgacguGAUCUCGgCGGg -3'
miRNA:   3'- caCGCGCU---GCGGGac---UUAGAGCgGCC- -5'
24875 5' -58.2 NC_005284.1 + 50433 0.66 0.549054
Target:  5'- uUGCuucaGCGAgCGCCU----UCUCGCCGGc -3'
miRNA:   3'- cACG----CGCU-GCGGGacuuAGAGCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 33708 0.66 0.549054
Target:  5'- -cGUGaCGAUGCCgaUUGGAUCUgGCCGc -3'
miRNA:   3'- caCGC-GCUGCGG--GACUUAGAgCGGCc -5'
24875 5' -58.2 NC_005284.1 + 28218 0.66 0.549054
Target:  5'- uGUG-GCGaACGCCac---UCUCGCCGGc -3'
miRNA:   3'- -CACgCGC-UGCGGgacuuAGAGCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 41796 0.67 0.538611
Target:  5'- uGUGCGCGACGCggUUGu-UgUCGCCGc -3'
miRNA:   3'- -CACGCGCUGCGg-GACuuAgAGCGGCc -5'
24875 5' -58.2 NC_005284.1 + 38968 0.67 0.517937
Target:  5'- cGUGCGCGAUGCU---GAUC-CGCgGGc -3'
miRNA:   3'- -CACGCGCUGCGGgacUUAGaGCGgCC- -5'
24875 5' -58.2 NC_005284.1 + 6987 0.67 0.517937
Target:  5'- -cGCGUacauGGCGCgCUcgacaUGGcgCUCGCCGGg -3'
miRNA:   3'- caCGCG----CUGCG-GG-----ACUuaGAGCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 15473 0.67 0.517937
Target:  5'- cGUGCGCGAC----UGGuAUCUCGCCGa -3'
miRNA:   3'- -CACGCGCUGcgggACU-UAGAGCGGCc -5'
24875 5' -58.2 NC_005284.1 + 34766 0.67 0.517937
Target:  5'- -gGCGCGAUGUCCgGAuAUCcaucagcagcuUCGCCGa -3'
miRNA:   3'- caCGCGCUGCGGGaCU-UAG-----------AGCGGCc -5'
24875 5' -58.2 NC_005284.1 + 22033 0.67 0.517937
Target:  5'- -aGCGCGACGaUCCUGAAcugaUCGCgGc -3'
miRNA:   3'- caCGCGCUGC-GGGACUUag--AGCGgCc -5'
24875 5' -58.2 NC_005284.1 + 36901 0.67 0.507719
Target:  5'- cUGCGCGgauGCGCCCgccGAUCcgggGCCGGc -3'
miRNA:   3'- cACGCGC---UGCGGGac-UUAGag--CGGCC- -5'
24875 5' -58.2 NC_005284.1 + 3242 0.67 0.507719
Target:  5'- -aGCGCGACGguCCCUGcugag-GCCGGg -3'
miRNA:   3'- caCGCGCUGC--GGGACuuagagCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 38700 0.67 0.497587
Target:  5'- -aGUGCGGCGCCgaGAAUCgUGuuGa -3'
miRNA:   3'- caCGCGCUGCGGgaCUUAGaGCggCc -5'
24875 5' -58.2 NC_005284.1 + 5234 0.67 0.497587
Target:  5'- -cGaCGCcGCGCCUgugGAAUCU-GCCGGu -3'
miRNA:   3'- caC-GCGcUGCGGGa--CUUAGAgCGGCC- -5'
24875 5' -58.2 NC_005284.1 + 19802 0.68 0.477603
Target:  5'- -aGCGCGGCGgCa-GAucUCUCGCgCGGg -3'
miRNA:   3'- caCGCGCUGCgGgaCUu-AGAGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.