Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24876 | 3' | -55.8 | NC_005284.1 | + | 16956 | 0.99 | 0.00456 |
Target: 5'- uCACCCCAUAG-CACGCACAUUCCGGCg -3' miRNA: 3'- -GUGGGGUAUCgGUGCGUGUAAGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 553 | 0.75 | 0.205545 |
Target: 5'- aGCCCuCAaggcaauGCCGCGCaACAUUUCGGCg -3' miRNA: 3'- gUGGG-GUau-----CGGUGCG-UGUAAGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 49081 | 0.74 | 0.253466 |
Target: 5'- uCGCCgCCGgagcuGCCACGUGCGaaUCCGGCg -3' miRNA: 3'- -GUGG-GGUau---CGGUGCGUGUa-AGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 33632 | 0.73 | 0.310197 |
Target: 5'- -uCCCCAUGGUCACGCguGCAUUCa-GCc -3' miRNA: 3'- guGGGGUAUCGGUGCG--UGUAAGgcCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 960 | 0.73 | 0.280695 |
Target: 5'- uCACCCCGUucgAGCUugGCGCAaucaUCUGcGCa -3' miRNA: 3'- -GUGGGGUA---UCGGugCGUGUa---AGGC-CG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 45637 | 0.72 | 0.331412 |
Target: 5'- cUugCCCAU-GCCGCGCGCGaUagcauccgcgacacCCGGCa -3' miRNA: 3'- -GugGGGUAuCGGUGCGUGUaA--------------GGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 21487 | 0.71 | 0.403126 |
Target: 5'- gUAUCUguUGGCCGCGCugcuugGCAUggcggCCGGCg -3' miRNA: 3'- -GUGGGguAUCGGUGCG------UGUAa----GGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 3965 | 0.71 | 0.393979 |
Target: 5'- gGCCCCAcccaacGGCCAuCGCAC--UCCGGa -3' miRNA: 3'- gUGGGGUa-----UCGGU-GCGUGuaAGGCCg -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 44048 | 0.7 | 0.421818 |
Target: 5'- gGCCCCccuuGCCGCaGCAucCAUUgCGGCg -3' miRNA: 3'- gUGGGGuau-CGGUG-CGU--GUAAgGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 39189 | 0.7 | 0.412407 |
Target: 5'- gGCCgCCGUAGuCCACGCuGCAcgaUUCCGcGUa -3' miRNA: 3'- gUGG-GGUAUC-GGUGCG-UGU---AAGGC-CG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 33573 | 0.69 | 0.480859 |
Target: 5'- gCGCCCCcucaAGCCGggcgUGCACGUcaggaCCGGCu -3' miRNA: 3'- -GUGGGGua--UCGGU----GCGUGUAa----GGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 27883 | 0.69 | 0.491091 |
Target: 5'- gAUCCCAUcauGUCGCGCauGCAUaagcCCGGCg -3' miRNA: 3'- gUGGGGUAu--CGGUGCG--UGUAa---GGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 14191 | 0.68 | 0.55438 |
Target: 5'- gGCCCCccaaaggggcGGCCGuCGCugAccUUCCGGUa -3' miRNA: 3'- gUGGGGua--------UCGGU-GCGugU--AAGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 34820 | 0.68 | 0.532964 |
Target: 5'- aACCCCGUAGaCAaGC-CAgcCCGGCa -3' miRNA: 3'- gUGGGGUAUCgGUgCGuGUaaGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 23288 | 0.68 | 0.576043 |
Target: 5'- gACCaCUGUuauGCCgagGCGCGCAaugcgcgcuuUUCCGGCg -3' miRNA: 3'- gUGG-GGUAu--CGG---UGCGUGU----------AAGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 5810 | 0.68 | 0.55438 |
Target: 5'- aGCCCCGUccAGCCGCGCAgCA--CC-GCu -3' miRNA: 3'- gUGGGGUA--UCGGUGCGU-GUaaGGcCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 20808 | 0.68 | 0.543637 |
Target: 5'- gCACCCCcugucgagcAGCC-CGCAgCAgcgCCGGCc -3' miRNA: 3'- -GUGGGGua-------UCGGuGCGU-GUaa-GGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 21955 | 0.67 | 0.586948 |
Target: 5'- gGCCUacagGGCUACGUgugcGCAgUCCGGCc -3' miRNA: 3'- gUGGGgua-UCGGUGCG----UGUaAGGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 30843 | 0.67 | 0.608863 |
Target: 5'- uCACCCCAUuGCUugaacaggaACgGCACAUcUgCGGCa -3' miRNA: 3'- -GUGGGGUAuCGG---------UG-CGUGUA-AgGCCG- -5' |
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24876 | 3' | -55.8 | NC_005284.1 | + | 16060 | 0.67 | 0.630857 |
Target: 5'- uGCCguCCGgcGCCAUgcaGCGCAUugagCCGGCa -3' miRNA: 3'- gUGG--GGUauCGGUG---CGUGUAa---GGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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