miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24878 5' -53.1 NC_005284.1 + 37164 0.67 0.806586
Target:  5'- aCUGgUUCGUCGGAuCGUUGUagcUGACGa -3'
miRNA:   3'- -GAUgAAGCGGCCU-GUAACGga-GCUGC- -5'
24878 5' -53.1 NC_005284.1 + 34060 0.67 0.796893
Target:  5'- -gGCUUCGCggcuCGGAaauacGCCUCGGCc -3'
miRNA:   3'- gaUGAAGCG----GCCUguaa-CGGAGCUGc -5'
24878 5' -53.1 NC_005284.1 + 21210 0.67 0.776992
Target:  5'- -gGCUUCGCUGGugGgUGCCgaagUCaGCGa -3'
miRNA:   3'- gaUGAAGCGGCCugUaACGG----AGcUGC- -5'
24878 5' -53.1 NC_005284.1 + 36851 0.67 0.766807
Target:  5'- uUGCUUUGCC--GCGUccGCCUCGGCu -3'
miRNA:   3'- gAUGAAGCGGccUGUAa-CGGAGCUGc -5'
24878 5' -53.1 NC_005284.1 + 38732 0.67 0.766807
Target:  5'- gCUGCauggCGCCGGACGgcaugagcucgaUUGCgUCGAgGc -3'
miRNA:   3'- -GAUGaa--GCGGCCUGU------------AACGgAGCUgC- -5'
24878 5' -53.1 NC_005284.1 + 3721 0.67 0.766807
Target:  5'- -aGCg--GCCGGGCGUUGCCgguucugUGGCa -3'
miRNA:   3'- gaUGaagCGGCCUGUAACGGa------GCUGc -5'
24878 5' -53.1 NC_005284.1 + 54224 0.68 0.735449
Target:  5'- ----gUCGCCGaaauguugcgcGGCAUUGCCUUGAgGg -3'
miRNA:   3'- gaugaAGCGGC-----------CUGUAACGGAGCUgC- -5'
24878 5' -53.1 NC_005284.1 + 31217 0.68 0.703138
Target:  5'- -aGCaUCGCCGcGACGUUGCCgauGCGc -3'
miRNA:   3'- gaUGaAGCGGC-CUGUAACGGagcUGC- -5'
24878 5' -53.1 NC_005284.1 + 35974 0.7 0.613579
Target:  5'- --cCUUCGCCGGgaaccacggcccgACGUUGCCg-GACGu -3'
miRNA:   3'- gauGAAGCGGCC-------------UGUAACGGagCUGC- -5'
24878 5' -53.1 NC_005284.1 + 27937 0.71 0.559559
Target:  5'- aUACUUCGCCGGACGauugggaagagUGgCUcaCGACGu -3'
miRNA:   3'- gAUGAAGCGGCCUGUa----------ACgGA--GCUGC- -5'
24878 5' -53.1 NC_005284.1 + 6038 0.71 0.548678
Target:  5'- --cUUUCGCgaGGACGUUGUCUCGGgGg -3'
miRNA:   3'- gauGAAGCGg-CCUGUAACGGAGCUgC- -5'
24878 5' -53.1 NC_005284.1 + 5632 0.75 0.361147
Target:  5'- -cGCcUCGCCGGGCccguccGCCUUGACGa -3'
miRNA:   3'- gaUGaAGCGGCCUGuaa---CGGAGCUGC- -5'
24878 5' -53.1 NC_005284.1 + 46027 0.84 0.099739
Target:  5'- cCUAUcugUCGCCGGGCGUcgagcagGCCUCGACGg -3'
miRNA:   3'- -GAUGa--AGCGGCCUGUAa------CGGAGCUGC- -5'
24878 5' -53.1 NC_005284.1 + 16021 1.09 0.001831
Target:  5'- aCUACUUCGCCGGACAUUGCCUCGACGc -3'
miRNA:   3'- -GAUGAAGCGGCCUGUAACGGAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.