miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24879 3' -53.6 NC_005284.1 + 43406 0.66 0.795705
Target:  5'- uGUCGAgGCGCGacaaAUCGUCCUCaa-GCa -3'
miRNA:   3'- -UAGCU-CGCGUcg--UAGUAGGAGaugCG- -5'
24879 3' -53.6 NC_005284.1 + 30047 0.66 0.795705
Target:  5'- gGUCGGGUGUAGCGgg--CCgaagACGCa -3'
miRNA:   3'- -UAGCUCGCGUCGUaguaGGaga-UGCG- -5'
24879 3' -53.6 NC_005284.1 + 44412 0.66 0.795705
Target:  5'- uUCGuGCGCAGCcgCucagauUCCUgUAacaGCg -3'
miRNA:   3'- uAGCuCGCGUCGuaGu-----AGGAgAUg--CG- -5'
24879 3' -53.6 NC_005284.1 + 44883 0.66 0.775484
Target:  5'- -gCGAGCGCgAGCGaCG-CUUCgGCGCg -3'
miRNA:   3'- uaGCUCGCG-UCGUaGUaGGAGaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 36998 0.66 0.754642
Target:  5'- -cCGAccuuCGCGGCGuucgccuuuaccUCGUCCUCgACGCg -3'
miRNA:   3'- uaGCUc---GCGUCGU------------AGUAGGAGaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 34937 0.67 0.733275
Target:  5'- cGUCGAGCGCAucGCAcgagaagaacUCGUUgUCUuuGCu -3'
miRNA:   3'- -UAGCUCGCGU--CGU----------AGUAGgAGAugCG- -5'
24879 3' -53.6 NC_005284.1 + 39142 0.67 0.711483
Target:  5'- -gCGaAGCGCAGUcagAUCGUCgUCauucaUGCGCa -3'
miRNA:   3'- uaGC-UCGCGUCG---UAGUAGgAG-----AUGCG- -5'
24879 3' -53.6 NC_005284.1 + 36863 0.67 0.710384
Target:  5'- uGUCG-GCGCcuugucgAGCGUgAUCCUuucgccagccgCUGCGCg -3'
miRNA:   3'- -UAGCuCGCG-------UCGUAgUAGGA-----------GAUGCG- -5'
24879 3' -53.6 NC_005284.1 + 968 0.67 0.700458
Target:  5'- uUCGAGCuuGGCGcaAUCaUCUGCGCa -3'
miRNA:   3'- uAGCUCGcgUCGUagUAGgAGAUGCG- -5'
24879 3' -53.6 NC_005284.1 + 36102 0.67 0.700458
Target:  5'- -gCGGGCGCgAGCAgcuccuUCAUCUgcuucucgaUCUGCGUu -3'
miRNA:   3'- uaGCUCGCG-UCGU------AGUAGG---------AGAUGCG- -5'
24879 3' -53.6 NC_005284.1 + 16676 0.67 0.697136
Target:  5'- cGUCGAGCGUgaggccGGCGUCggcgugccgcugacGUCCg--ACGCg -3'
miRNA:   3'- -UAGCUCGCG------UCGUAG--------------UAGGagaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 16026 0.67 0.689363
Target:  5'- gGUCGGGCGCGaCGagAUCCgcaUUGCGCc -3'
miRNA:   3'- -UAGCUCGCGUcGUagUAGGa--GAUGCG- -5'
24879 3' -53.6 NC_005284.1 + 10854 0.68 0.678211
Target:  5'- cGUCGccGCGCAGCAUCAguug--GCGCa -3'
miRNA:   3'- -UAGCu-CGCGUCGUAGUaggagaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 39579 0.68 0.678211
Target:  5'- uUCGGcCGCuGCGUaGUCCUCcgACGCg -3'
miRNA:   3'- uAGCUcGCGuCGUAgUAGGAGa-UGCG- -5'
24879 3' -53.6 NC_005284.1 + 9899 0.68 0.667013
Target:  5'- cUCGAGCGCgccgaAGCGUCGcucgCgCUC-GCGCa -3'
miRNA:   3'- uAGCUCGCG-----UCGUAGUa---G-GAGaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 45227 0.68 0.644526
Target:  5'- gAUCGAGCGCGuGgAUCAccgaaUCUUCaagcaUGCGCa -3'
miRNA:   3'- -UAGCUCGCGU-CgUAGU-----AGGAG-----AUGCG- -5'
24879 3' -53.6 NC_005284.1 + 36815 0.68 0.644526
Target:  5'- cUCGAGCGCuucGGCcUCG-CC-CUugGCg -3'
miRNA:   3'- uAGCUCGCG---UCGuAGUaGGaGAugCG- -5'
24879 3' -53.6 NC_005284.1 + 54467 0.68 0.644526
Target:  5'- -gCGGuGCGCGGCaAUCGUCa--UGCGCg -3'
miRNA:   3'- uaGCU-CGCGUCG-UAGUAGgagAUGCG- -5'
24879 3' -53.6 NC_005284.1 + 12233 0.68 0.644526
Target:  5'- -aCGAGCGaCAGCAUC--CCg--GCGCa -3'
miRNA:   3'- uaGCUCGC-GUCGUAGuaGGagaUGCG- -5'
24879 3' -53.6 NC_005284.1 + 46085 0.68 0.633259
Target:  5'- cGUCGAGCGCGcGCAcCGUgaCCUgcACGCu -3'
miRNA:   3'- -UAGCUCGCGU-CGUaGUA--GGAgaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.