miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24879 5' -59.9 NC_005284.1 + 38689 0.66 0.484953
Target:  5'- gCGGCGaaaggcucgaUGGACguauCGGCuGCCgGCUCa -3'
miRNA:   3'- -GUCGC----------ACCUGau--GCCGcCGGaCGAGc -5'
24879 5' -59.9 NC_005284.1 + 40277 0.66 0.475062
Target:  5'- uCGGCGaUGGcuGCUGCGcGuCGGauguCUGCUCGa -3'
miRNA:   3'- -GUCGC-ACC--UGAUGC-C-GCCg---GACGAGC- -5'
24879 5' -59.9 NC_005284.1 + 19696 0.66 0.469177
Target:  5'- -uGCGggauuauggauuugGGACggaGCGGCGcGCCucaUGCUCGa -3'
miRNA:   3'- guCGCa-------------CCUGa--UGCCGC-CGG---ACGAGC- -5'
24879 5' -59.9 NC_005284.1 + 22452 0.66 0.446017
Target:  5'- uCGGCGUGGACgcuuCGGCcGaCUGCcaaUCGg -3'
miRNA:   3'- -GUCGCACCUGau--GCCGcCgGACG---AGC- -5'
24879 5' -59.9 NC_005284.1 + 33967 0.67 0.417991
Target:  5'- uCGGCc-GGcGCUGCuGCGGgCUGCUCGa -3'
miRNA:   3'- -GUCGcaCC-UGAUGcCGCCgGACGAGC- -5'
24879 5' -59.9 NC_005284.1 + 53878 0.67 0.417991
Target:  5'- aCAGCGgccgGGAUg--GGCGGCCgucgucGCUUGc -3'
miRNA:   3'- -GUCGCa---CCUGaugCCGCCGGa-----CGAGC- -5'
24879 5' -59.9 NC_005284.1 + 38091 0.67 0.417991
Target:  5'- -cGCGUcGGACgucaGCGGCacgccgacgccGGCCUcacGCUCGa -3'
miRNA:   3'- guCGCA-CCUGa---UGCCG-----------CCGGA---CGAGC- -5'
24879 5' -59.9 NC_005284.1 + 35566 0.67 0.406183
Target:  5'- uCGGCGUaGGACUGCGccacgguuuguacaGCGGCCgcguugucGUUCa -3'
miRNA:   3'- -GUCGCA-CCUGAUGC--------------CGCCGGa-------CGAGc -5'
24879 5' -59.9 NC_005284.1 + 53582 0.67 0.382341
Target:  5'- gGGCGUGcGGCUGUGGCGGUCaucgaGUUCa -3'
miRNA:   3'- gUCGCAC-CUGAUGCCGCCGGa----CGAGc -5'
24879 5' -59.9 NC_005284.1 + 17246 0.68 0.348774
Target:  5'- cCGGCGUGGGuCUACuaCGGCCUacuucucgacaaGCUCa -3'
miRNA:   3'- -GUCGCACCU-GAUGccGCCGGA------------CGAGc -5'
24879 5' -59.9 NC_005284.1 + 33220 0.68 0.348774
Target:  5'- -cGCGUcGAacgccCGcGCGGCCUGCUCGu -3'
miRNA:   3'- guCGCAcCUgau--GC-CGCCGGACGAGC- -5'
24879 5' -59.9 NC_005284.1 + 8327 0.69 0.309849
Target:  5'- cCAGCGUcGGACgcuCGGCGGCauucgGCgacggCGa -3'
miRNA:   3'- -GUCGCA-CCUGau-GCCGCCGga---CGa----GC- -5'
24879 5' -59.9 NC_005284.1 + 7697 0.69 0.288128
Target:  5'- aCAGCGUGcGCgugaGCGGUGcGCCgaaGCUCGu -3'
miRNA:   3'- -GUCGCACcUGa---UGCCGC-CGGa--CGAGC- -5'
24879 5' -59.9 NC_005284.1 + 45061 0.71 0.213154
Target:  5'- aAGCGUGGGCggGCGagcGCGGCUacgcGCUCGu -3'
miRNA:   3'- gUCGCACCUGa-UGC---CGCCGGa---CGAGC- -5'
24879 5' -59.9 NC_005284.1 + 54239 0.72 0.186226
Target:  5'- -cGCGgcauugccuugaGGGCUugGGCGGCUUGUUUGg -3'
miRNA:   3'- guCGCa-----------CCUGAugCCGCCGGACGAGC- -5'
24879 5' -59.9 NC_005284.1 + 15603 1.08 0.000399
Target:  5'- gCAGCGUGGACUACGGCGGCCUGCUCGa -3'
miRNA:   3'- -GUCGCACCUGAUGCCGCCGGACGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.