miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24881 5' -56.2 NC_005284.1 + 32340 0.66 0.669513
Target:  5'- aGCgugCCGCacGCUgGAugUCGGUGAggguuUCCGg -3'
miRNA:   3'- aCGa--GGCG--CGA-CUugAGCCGUU-----AGGC- -5'
24881 5' -56.2 NC_005284.1 + 13416 0.66 0.669513
Target:  5'- cGUgaCCGCggGCguguCUCGGCGAUCCGc -3'
miRNA:   3'- aCGa-GGCG--CGacuuGAGCCGUUAGGC- -5'
24881 5' -56.2 NC_005284.1 + 33163 0.66 0.669513
Target:  5'- cUGCUCgGCGUcGAGCgCGGCGcgCg- -3'
miRNA:   3'- -ACGAGgCGCGaCUUGaGCCGUuaGgc -5'
24881 5' -56.2 NC_005284.1 + 16146 0.66 0.647611
Target:  5'- cGCgcagCCGUggggcacaucGCUGAugggGCUCGGCGcgUCGa -3'
miRNA:   3'- aCGa---GGCG----------CGACU----UGAGCCGUuaGGC- -5'
24881 5' -56.2 NC_005284.1 + 10653 0.66 0.647611
Target:  5'- aGCgCUGCGCgagGAACUgGuGCGcgCCGc -3'
miRNA:   3'- aCGaGGCGCGa--CUUGAgC-CGUuaGGC- -5'
24881 5' -56.2 NC_005284.1 + 1107 0.66 0.647611
Target:  5'- cGCUUCGagcCGCUGA--UUGGCAAcCCGg -3'
miRNA:   3'- aCGAGGC---GCGACUugAGCCGUUaGGC- -5'
24881 5' -56.2 NC_005284.1 + 25272 0.66 0.644319
Target:  5'- cGCUCCgagcgguuucugagGCGCUcuccGAACUCgGGCGuUCCc -3'
miRNA:   3'- aCGAGG--------------CGCGA----CUUGAG-CCGUuAGGc -5'
24881 5' -56.2 NC_005284.1 + 26144 0.66 0.636635
Target:  5'- gUGUUCgCGCGCUGAcgUCGGaacucccUCCGa -3'
miRNA:   3'- -ACGAG-GCGCGACUugAGCCguu----AGGC- -5'
24881 5' -56.2 NC_005284.1 + 33229 0.66 0.636635
Target:  5'- cGC-CCGCGCggccuGCucgUCGGCAAgCCGa -3'
miRNA:   3'- aCGaGGCGCGacu--UG---AGCCGUUaGGC- -5'
24881 5' -56.2 NC_005284.1 + 45313 0.66 0.636635
Target:  5'- cUGCgucgCCGCGaCUGcgGAUUgcccaaaguacaCGGCAAUCCGc -3'
miRNA:   3'- -ACGa---GGCGC-GAC--UUGA------------GCCGUUAGGC- -5'
24881 5' -56.2 NC_005284.1 + 44209 0.66 0.625653
Target:  5'- aGCgucaaCGCGCgcuuccGAGCUgGGCAGgggCCGg -3'
miRNA:   3'- aCGag---GCGCGa-----CUUGAgCCGUUa--GGC- -5'
24881 5' -56.2 NC_005284.1 + 21491 0.67 0.614678
Target:  5'- cUGUuggCCGCGCU--GCUUGGCAuggcggCCGg -3'
miRNA:   3'- -ACGa--GGCGCGAcuUGAGCCGUua----GGC- -5'
24881 5' -56.2 NC_005284.1 + 47717 0.67 0.613581
Target:  5'- cGCUCgCGUGCgcaGAaggccguGCUCGGCGGUaCGg -3'
miRNA:   3'- aCGAG-GCGCGa--CU-------UGAGCCGUUAgGC- -5'
24881 5' -56.2 NC_005284.1 + 40470 0.67 0.6081
Target:  5'- --gUCCGCgguaauggucacuucGCUGccuccAAUUCGGCAAUCCGc -3'
miRNA:   3'- acgAGGCG---------------CGAC-----UUGAGCCGUUAGGC- -5'
24881 5' -56.2 NC_005284.1 + 7493 0.67 0.603718
Target:  5'- aGCUCgCGCGCguUGAucACgCGGCGAcggCCGu -3'
miRNA:   3'- aCGAG-GCGCG--ACU--UGaGCCGUUa--GGC- -5'
24881 5' -56.2 NC_005284.1 + 48980 0.67 0.571018
Target:  5'- gUGCUgCGCgGCUGGACggGGCuguUCCc -3'
miRNA:   3'- -ACGAgGCG-CGACUUGagCCGuu-AGGc -5'
24881 5' -56.2 NC_005284.1 + 45540 0.67 0.564524
Target:  5'- aUGCUCCGCGCucuaugccgccgcgUGGcgcgucgcccgcgcACUCGGCuAUCg- -3'
miRNA:   3'- -ACGAGGCGCG--------------ACU--------------UGAGCCGuUAGgc -5'
24881 5' -56.2 NC_005284.1 + 42746 0.68 0.549452
Target:  5'- cGCgccgaaaaCCGCGC-GAGgUCGGCGAUCa- -3'
miRNA:   3'- aCGa-------GGCGCGaCUUgAGCCGUUAGgc -5'
24881 5' -56.2 NC_005284.1 + 46471 0.68 0.549452
Target:  5'- aGCgUCCGaCGCUGGcguuagcuGCUCGuGCAuggCCGa -3'
miRNA:   3'- aCG-AGGC-GCGACU--------UGAGC-CGUua-GGC- -5'
24881 5' -56.2 NC_005284.1 + 10148 0.68 0.528146
Target:  5'- cGCUCgCGCGUacgggcacgaUGAugcGCUCGGUugguUCCGg -3'
miRNA:   3'- aCGAG-GCGCG----------ACU---UGAGCCGuu--AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.