Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24881 | 5' | -56.2 | NC_005284.1 | + | 1107 | 0.66 | 0.647611 |
Target: 5'- cGCUUCGagcCGCUGA--UUGGCAAcCCGg -3' miRNA: 3'- aCGAGGC---GCGACUugAGCCGUUaGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 7493 | 0.67 | 0.603718 |
Target: 5'- aGCUCgCGCGCguUGAucACgCGGCGAcggCCGu -3' miRNA: 3'- aCGAG-GCGCG--ACU--UGaGCCGUUa--GGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 8244 | 0.76 | 0.178007 |
Target: 5'- cGCU-CGCGCUGcGGCUCGGCAAgacguuggCCGa -3' miRNA: 3'- aCGAgGCGCGAC-UUGAGCCGUUa-------GGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 10148 | 0.68 | 0.528146 |
Target: 5'- cGCUCgCGCGUacgggcacgaUGAugcGCUCGGUugguUCCGg -3' miRNA: 3'- aCGAG-GCGCG----------ACU---UGAGCCGuu--AGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 10653 | 0.66 | 0.647611 |
Target: 5'- aGCgCUGCGCgagGAACUgGuGCGcgCCGc -3' miRNA: 3'- aCGaGGCGCGa--CUUGAgC-CGUuaGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 12098 | 0.69 | 0.486523 |
Target: 5'- gGCUCCGCuuugGGAUUCGGCGGugucUCUGa -3' miRNA: 3'- aCGAGGCGcga-CUUGAGCCGUU----AGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 13416 | 0.66 | 0.669513 |
Target: 5'- cGUgaCCGCggGCguguCUCGGCGAUCCGc -3' miRNA: 3'- aCGa-GGCG--CGacuuGAGCCGUUAGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 13914 | 1.09 | 0.000716 |
Target: 5'- aUGCUCCGCGCUGAACUCGGCAAUCCGa -3' miRNA: 3'- -ACGAGGCGCGACUUGAGCCGUUAGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 14572 | 0.74 | 0.238309 |
Target: 5'- cGCUgUGCGUUGcGCUUGGCGAUCuCGu -3' miRNA: 3'- aCGAgGCGCGACuUGAGCCGUUAG-GC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 14626 | 0.72 | 0.298121 |
Target: 5'- cGCUCgCGCGCuaccucgacgccgUGAAUUuuccggcCGGCAAUCCGa -3' miRNA: 3'- aCGAG-GCGCG-------------ACUUGA-------GCCGUUAGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 16146 | 0.66 | 0.647611 |
Target: 5'- cGCgcagCCGUggggcacaucGCUGAugggGCUCGGCGcgUCGa -3' miRNA: 3'- aCGa---GGCG----------CGACU----UGAGCCGUuaGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 21491 | 0.67 | 0.614678 |
Target: 5'- cUGUuggCCGCGCU--GCUUGGCAuggcggCCGg -3' miRNA: 3'- -ACGa--GGCGCGAcuUGAGCCGUua----GGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 25272 | 0.66 | 0.644319 |
Target: 5'- cGCUCCgagcgguuucugagGCGCUcuccGAACUCgGGCGuUCCc -3' miRNA: 3'- aCGAGG--------------CGCGA----CUUGAG-CCGUuAGGc -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 26144 | 0.66 | 0.636635 |
Target: 5'- gUGUUCgCGCGCUGAcgUCGGaacucccUCCGa -3' miRNA: 3'- -ACGAG-GCGCGACUugAGCCguu----AGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 31759 | 0.71 | 0.34686 |
Target: 5'- cGCUCUGCGCaGAGCUUGuCGucAUCCGu -3' miRNA: 3'- aCGAGGCGCGaCUUGAGCcGU--UAGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 32340 | 0.66 | 0.669513 |
Target: 5'- aGCgugCCGCacGCUgGAugUCGGUGAggguuUCCGg -3' miRNA: 3'- aCGa--GGCG--CGA-CUugAGCCGUU-----AGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 33163 | 0.66 | 0.669513 |
Target: 5'- cUGCUCgGCGUcGAGCgCGGCGcgCg- -3' miRNA: 3'- -ACGAGgCGCGaCUUGaGCCGUuaGgc -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 33229 | 0.66 | 0.636635 |
Target: 5'- cGC-CCGCGCggccuGCucgUCGGCAAgCCGa -3' miRNA: 3'- aCGaGGCGCGacu--UG---AGCCGUUaGGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 35453 | 0.7 | 0.417753 |
Target: 5'- uUGUUCguCGCGCUGGAuCUCGcGCGGUgCGa -3' miRNA: 3'- -ACGAG--GCGCGACUU-GAGC-CGUUAgGC- -5' |
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24881 | 5' | -56.2 | NC_005284.1 | + | 39128 | 0.71 | 0.363753 |
Target: 5'- cGC-CCGCGU--GAUUCGGCAcgCCGu -3' miRNA: 3'- aCGaGGCGCGacUUGAGCCGUuaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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