miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24882 3' -52.1 NC_005284.1 + 35908 0.66 0.908758
Target:  5'- aUCuGGCCGG-CGAAAuacuUCCGuagUCGCu -3'
miRNA:   3'- -AGcUCGGCCuGCUUU----GGGCuaaAGCG- -5'
24882 3' -52.1 NC_005284.1 + 175 0.66 0.907436
Target:  5'- aUCGAGCCGccggacuggauugucGGCGAGGCgCGGggcaugugggagCGCg -3'
miRNA:   3'- -AGCUCGGC---------------CUGCUUUGgGCUaaa---------GCG- -5'
24882 3' -52.1 NC_005284.1 + 41163 0.66 0.902034
Target:  5'- cUGAcuGUCGG-CGAAAUCgGGUUUCGUc -3'
miRNA:   3'- aGCU--CGGCCuGCUUUGGgCUAAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 38463 0.66 0.902034
Target:  5'- uUCGAGCC-GACGA---CC-AUUUCGCc -3'
miRNA:   3'- -AGCUCGGcCUGCUuugGGcUAAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 17660 0.66 0.887768
Target:  5'- gUCGAGCCcgugcaGGACGAcga-CGGgaUCGCg -3'
miRNA:   3'- -AGCUCGG------CCUGCUuuggGCUaaAGCG- -5'
24882 3' -52.1 NC_005284.1 + 45271 0.66 0.887768
Target:  5'- cUCGAcgagcgcucGCCGGGCGccGACCCacgcugUCGCc -3'
miRNA:   3'- -AGCU---------CGGCCUGCu-UUGGGcuaa--AGCG- -5'
24882 3' -52.1 NC_005284.1 + 36019 0.66 0.887768
Target:  5'- aCGAGCaCGGGCGguACUggCGAUUgguaUGCu -3'
miRNA:   3'- aGCUCG-GCCUGCuuUGG--GCUAAa---GCG- -5'
24882 3' -52.1 NC_005284.1 + 10954 0.66 0.88328
Target:  5'- cUCGucGCCGGACGAGcggacgcaucaagucGCUCGAaaaaGCg -3'
miRNA:   3'- -AGCu-CGGCCUGCUU---------------UGGGCUaaagCG- -5'
24882 3' -52.1 NC_005284.1 + 22541 0.66 0.880235
Target:  5'- aCGGuGCCGGGCcuGAACCUGcug-CGCa -3'
miRNA:   3'- aGCU-CGGCCUGc-UUUGGGCuaaaGCG- -5'
24882 3' -52.1 NC_005284.1 + 14715 0.66 0.880235
Target:  5'- aUCGAGCagaagaGcGACGAGcAgCCGggUUUGCa -3'
miRNA:   3'- -AGCUCGg-----C-CUGCUU-UgGGCuaAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 22272 0.66 0.879468
Target:  5'- gCGAGCCuGACGAAcaGCCagcgcgaggcaauCGAgUUUGCa -3'
miRNA:   3'- aGCUCGGcCUGCUU--UGG-------------GCUaAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 45086 0.66 0.877925
Target:  5'- aUCGAGCCaGcCGucAAugCCGAcugcaucgcaaggcUUUCGCg -3'
miRNA:   3'- -AGCUCGGcCuGC--UUugGGCU--------------AAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 53793 0.66 0.877149
Target:  5'- cCGcGCCGGGCGAAagaccucccagGCCUGcuuuucagucgUCGCg -3'
miRNA:   3'- aGCuCGGCCUGCUU-----------UGGGCuaa--------AGCG- -5'
24882 3' -52.1 NC_005284.1 + 14592 0.66 0.872444
Target:  5'- -gGAGCCaGAgGAcGCCgGAguuggUCGCg -3'
miRNA:   3'- agCUCGGcCUgCUuUGGgCUaa---AGCG- -5'
24882 3' -52.1 NC_005284.1 + 2030 0.66 0.872444
Target:  5'- gCGGGCCGauuccaucacGACGGcAACCCGAUcaugaCGUg -3'
miRNA:   3'- aGCUCGGC----------CUGCU-UUGGGCUAaa---GCG- -5'
24882 3' -52.1 NC_005284.1 + 50631 0.67 0.864399
Target:  5'- gUUGAGauuCCGGACGGcucguauaguGugCCGAgacaUCGCg -3'
miRNA:   3'- -AGCUC---GGCCUGCU----------UugGGCUaa--AGCG- -5'
24882 3' -52.1 NC_005284.1 + 15399 0.67 0.864399
Target:  5'- uUCGAGCCGG--GAGGCUacg--UCGCg -3'
miRNA:   3'- -AGCUCGGCCugCUUUGGgcuaaAGCG- -5'
24882 3' -52.1 NC_005284.1 + 16111 0.67 0.864399
Target:  5'- cUCGuuGCCGuuggcgcgguGGCGAcgUUCGGUUUCGCg -3'
miRNA:   3'- -AGCu-CGGC----------CUGCUuuGGGCUAAAGCG- -5'
24882 3' -52.1 NC_005284.1 + 6087 0.67 0.864399
Target:  5'- cCGAGCgGGGCGAAGagcuugcuuuuCCCGua-UCGa -3'
miRNA:   3'- aGCUCGgCCUGCUUU-----------GGGCuaaAGCg -5'
24882 3' -52.1 NC_005284.1 + 14352 0.67 0.864399
Target:  5'- cUCGAGCCGGGuCGAcugaUCGAgcuUUUCGa -3'
miRNA:   3'- -AGCUCGGCCU-GCUuug-GGCU---AAAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.