miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24882 5' -53.7 NC_005284.1 + 26505 0.66 0.774482
Target:  5'- uGGCGAu-CCAGUCugaugcaucggcaguUCGCCGcgccgcUCCCGUu -3'
miRNA:   3'- uCCGCUuuGGUUAG---------------AGCGGU------AGGGUA- -5'
24882 5' -53.7 NC_005284.1 + 37406 0.66 0.770346
Target:  5'- cAGGUGAAGCaCGGcucCUUGCCGcccuUCCCGUc -3'
miRNA:   3'- -UCCGCUUUG-GUUa--GAGCGGU----AGGGUA- -5'
24882 5' -53.7 NC_005284.1 + 42454 0.66 0.770346
Target:  5'- -cGCGAAGCCGga-UCGCC-UCCCu- -3'
miRNA:   3'- ucCGCUUUGGUuagAGCGGuAGGGua -5'
24882 5' -53.7 NC_005284.1 + 42525 0.66 0.7599
Target:  5'- cGGCGcGGACCAcgaaCUCGCCGUUCgAa -3'
miRNA:   3'- uCCGC-UUUGGUua--GAGCGGUAGGgUa -5'
24882 5' -53.7 NC_005284.1 + 23863 0.66 0.749317
Target:  5'- cGGCGAAagcgGCCAcgg-CGCCcgCCCGa -3'
miRNA:   3'- uCCGCUU----UGGUuagaGCGGuaGGGUa -5'
24882 5' -53.7 NC_005284.1 + 15238 0.66 0.748251
Target:  5'- uGGGCGAGAUUGucgcUCUCGUucauucgCAUCCCGg -3'
miRNA:   3'- -UCCGCUUUGGUu---AGAGCG-------GUAGGGUa -5'
24882 5' -53.7 NC_005284.1 + 31196 0.66 0.738608
Target:  5'- cGGuCGAuuCCGAUCUCGCguagCAUCgCCGc -3'
miRNA:   3'- uCC-GCUuuGGUUAGAGCG----GUAG-GGUa -5'
24882 5' -53.7 NC_005284.1 + 4577 0.67 0.727786
Target:  5'- cGGCGAAugCGGcUUUCGUUugaAUCCCGUu -3'
miRNA:   3'- uCCGCUUugGUU-AGAGCGG---UAGGGUA- -5'
24882 5' -53.7 NC_005284.1 + 38756 0.67 0.694767
Target:  5'- cGGCGcaauGCgGAUCUCGUCGcgCCCGa -3'
miRNA:   3'- uCCGCuu--UGgUUAGAGCGGUa-GGGUa -5'
24882 5' -53.7 NC_005284.1 + 43040 0.67 0.694767
Target:  5'- cGGGCGAAcCCAGcg-UGCCGUCCUu- -3'
miRNA:   3'- -UCCGCUUuGGUUagaGCGGUAGGGua -5'
24882 5' -53.7 NC_005284.1 + 33270 0.68 0.649903
Target:  5'- uGGGCGAugcuGCCGcgcgugcuUCUUGCCAugcaUCCCGc -3'
miRNA:   3'- -UCCGCUu---UGGUu-------AGAGCGGU----AGGGUa -5'
24882 5' -53.7 NC_005284.1 + 39840 0.68 0.638616
Target:  5'- uGGGCGcgGCCGAuguUCUCGCUGUaCCgAUg -3'
miRNA:   3'- -UCCGCuuUGGUU---AGAGCGGUA-GGgUA- -5'
24882 5' -53.7 NC_005284.1 + 32909 0.69 0.571122
Target:  5'- -uGCGAGACCGAUCaUCGCUucgucgucgCCCAa -3'
miRNA:   3'- ucCGCUUUGGUUAG-AGCGGua-------GGGUa -5'
24882 5' -53.7 NC_005284.1 + 47340 0.69 0.571122
Target:  5'- cGGGCGAAgaGCCGAUCacgauuccaGCgAUCCCGa -3'
miRNA:   3'- -UCCGCUU--UGGUUAGag-------CGgUAGGGUa -5'
24882 5' -53.7 NC_005284.1 + 54338 0.7 0.527043
Target:  5'- cAGGCGcuGCCGG-CUCGCCGggucgagcCCCAg -3'
miRNA:   3'- -UCCGCuuUGGUUaGAGCGGUa-------GGGUa -5'
24882 5' -53.7 NC_005284.1 + 26688 0.7 0.527043
Target:  5'- uGGGUGGGACCAAUCUCGaua-CCUAa -3'
miRNA:   3'- -UCCGCUUUGGUUAGAGCgguaGGGUa -5'
24882 5' -53.7 NC_005284.1 + 1450 0.7 0.494835
Target:  5'- uGGCGAAGCgAcagccgcagugcGUC-CGCUAUCCCAa -3'
miRNA:   3'- uCCGCUUUGgU------------UAGaGCGGUAGGGUa -5'
24882 5' -53.7 NC_005284.1 + 28220 0.73 0.377422
Target:  5'- uGGCGAAcGCCAcUCUCGCCGgccaccuacugcccgCCCAa -3'
miRNA:   3'- uCCGCUU-UGGUuAGAGCGGUa--------------GGGUa -5'
24882 5' -53.7 NC_005284.1 + 33382 0.73 0.358726
Target:  5'- cGGCGcuGCCGAcggCUCGCCAUcaCCCGa -3'
miRNA:   3'- uCCGCuuUGGUUa--GAGCGGUA--GGGUa -5'
24882 5' -53.7 NC_005284.1 + 9720 0.74 0.308957
Target:  5'- gAGcGCGuAGCCGcgCUCGCCcgCCCAc -3'
miRNA:   3'- -UC-CGCuUUGGUuaGAGCGGuaGGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.