Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24883 | 3' | -60.3 | NC_005284.1 | + | 52454 | 0.66 | 0.462668 |
Target: 5'- uGGGCG-GUUUC-----UCCGCAGGCa -3' miRNA: 3'- gCCCGCaCAGAGccgcuAGGCGUCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 31270 | 0.66 | 0.50176 |
Target: 5'- -uGGCGUGUCggcgaucaggCGGaacaGGUCCGCGcGCc -3' miRNA: 3'- gcCCGCACAGa---------GCCg---CUAGGCGUcCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 27519 | 0.66 | 0.50176 |
Target: 5'- uGGGCGcGUCgaGGCGuUCCucGCGGGg -3' miRNA: 3'- gCCCGCaCAGagCCGCuAGG--CGUCCg -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 17487 | 0.66 | 0.50176 |
Target: 5'- gGGGCGccGggUCGGUGGUCgCGUcGGCc -3' miRNA: 3'- gCCCGCa-CagAGCCGCUAG-GCGuCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 9029 | 0.66 | 0.481045 |
Target: 5'- uCGGGU--GUCUCGGCaGAUaCUGCucguaugGGGCu -3' miRNA: 3'- -GCCCGcaCAGAGCCG-CUA-GGCG-------UCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 14568 | 0.66 | 0.472295 |
Target: 5'- uCGGcGCuGUGcguugcgCUUGGCGAUCuCGUcGGCg -3' miRNA: 3'- -GCC-CG-CACa------GAGCCGCUAG-GCGuCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 13377 | 0.66 | 0.472295 |
Target: 5'- uGGGCGgcgaucUGUCUgCGGCGGUUCaaaGCgacgaAGGCc -3' miRNA: 3'- gCCCGC------ACAGA-GCCGCUAGG---CG-----UCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 47804 | 0.66 | 0.462668 |
Target: 5'- aCGGGCGagcgCUUGGCGGcgCUGCgauGGGUg -3' miRNA: 3'- -GCCCGCaca-GAGCCGCUa-GGCG---UCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 6043 | 0.66 | 0.44373 |
Target: 5'- gCGaGGaCGuUGUCUCGGgGGcgUCCGCGaGCg -3' miRNA: 3'- -GC-CC-GC-ACAGAGCCgCU--AGGCGUcCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 15336 | 0.67 | 0.434426 |
Target: 5'- uGGGUgaucGUGUCgcUCGGCG---UGCAGGCc -3' miRNA: 3'- gCCCG----CACAG--AGCCGCuagGCGUCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 12302 | 0.67 | 0.389669 |
Target: 5'- cCGGGCGUGcgcgcacacCUUGaGCGAUUgaaCGCAGGg -3' miRNA: 3'- -GCCCGCACa--------GAGC-CGCUAG---GCGUCCg -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 30073 | 0.67 | 0.427981 |
Target: 5'- aCGGGCGUcGUUucgcccuUCGGCGAcaugccaccUugaccggaguuggcuCCGUAGGCa -3' miRNA: 3'- -GCCCGCA-CAG-------AGCCGCU---------A---------------GGCGUCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 9472 | 0.68 | 0.381086 |
Target: 5'- uGGGCaauccgcaGUCgCGGCGA--CGCAGGCg -3' miRNA: 3'- gCCCGca------CAGaGCCGCUagGCGUCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 19415 | 0.68 | 0.364303 |
Target: 5'- -aGGCGUGa-UCGGCGcgCCGUucguugugcaAGGCg -3' miRNA: 3'- gcCCGCACagAGCCGCuaGGCG----------UCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 47733 | 0.69 | 0.332299 |
Target: 5'- aGGcCGUG-CUCGGCGGUaCgGCGGcGCg -3' miRNA: 3'- gCCcGCACaGAGCCGCUA-GgCGUC-CG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 18622 | 0.69 | 0.295268 |
Target: 5'- uGGGCGUuUC-CGGgugacgGAUCCGCuGGCg -3' miRNA: 3'- gCCCGCAcAGaGCCg-----CUAGGCGuCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 5910 | 0.7 | 0.288258 |
Target: 5'- cCGGGCGUGUCcaCGGCGccgacuucUCCGCc-GCu -3' miRNA: 3'- -GCCCGCACAGa-GCCGCu-------AGGCGucCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 26943 | 0.7 | 0.25517 |
Target: 5'- gCGGGCGUcGUCU-GGCGAcUCC-CAGcGCu -3' miRNA: 3'- -GCCCGCA-CAGAgCCGCU-AGGcGUC-CG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 15678 | 0.72 | 0.193352 |
Target: 5'- gCGGGCGUGuaUCUCGGUGAcgggcaauUCCuGCaccacaugcacGGGCg -3' miRNA: 3'- -GCCCGCAC--AGAGCCGCU--------AGG-CG-----------UCCG- -5' |
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24883 | 3' | -60.3 | NC_005284.1 | + | 13423 | 1.1 | 0.000319 |
Target: 5'- gCGGGCGUGUCUCGGCGAUCCGCAGGCc -3' miRNA: 3'- -GCCCGCACAGAGCCGCUAGGCGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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