miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24883 5' -54.2 NC_005284.1 + 13990 0.66 0.766846
Target:  5'- gUGAUgGCGCgGCUGCgCGGuaAGCgggGCGUGa -3'
miRNA:   3'- -ACUA-UGCG-CGGCG-GCU--UCGaa-CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 48255 0.66 0.766846
Target:  5'- cUGAcgGCGCGuuGCCGu-GCggGCAc- -3'
miRNA:   3'- -ACUa-UGCGCggCGGCuuCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 21618 0.66 0.75643
Target:  5'- aGAUcucGCGCGCCgcgcucgacGCCGAgcAGCgUGCGa- -3'
miRNA:   3'- aCUA---UGCGCGG---------CGGCU--UCGaACGUac -5'
24883 5' -54.2 NC_005284.1 + 31469 0.66 0.745881
Target:  5'- uUGAccgcCGUGCCGCCGGaaaAGCgcGCAUu -3'
miRNA:   3'- -ACUau--GCGCGGCGGCU---UCGaaCGUAc -5'
24883 5' -54.2 NC_005284.1 + 21503 0.66 0.745881
Target:  5'- cUGcUugGCaugGCgGCCGgcGCUUGCGUc -3'
miRNA:   3'- -ACuAugCG---CGgCGGCuuCGAACGUAc -5'
24883 5' -54.2 NC_005284.1 + 1184 0.66 0.745881
Target:  5'- cGAUA-GCGCCGCacuguacgaaaCGAuGCUgaccgGCAUGg -3'
miRNA:   3'- aCUAUgCGCGGCG-----------GCUuCGAa----CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 50331 0.66 0.735213
Target:  5'- gGcgGCGUGCCGCggCGAAccguGCUuucUGCGUGu -3'
miRNA:   3'- aCuaUGCGCGGCG--GCUU----CGA---ACGUAC- -5'
24883 5' -54.2 NC_005284.1 + 36907 0.66 0.724437
Target:  5'- gGAUGCGC-CCGCCGAuccggGGCcgGCc-- -3'
miRNA:   3'- aCUAUGCGcGGCGGCU-----UCGaaCGuac -5'
24883 5' -54.2 NC_005284.1 + 43834 0.67 0.702612
Target:  5'- ----gUGCGCCGaUCGAAGCUUGUc-- -3'
miRNA:   3'- acuauGCGCGGC-GGCUUCGAACGuac -5'
24883 5' -54.2 NC_005284.1 + 21842 0.67 0.702612
Target:  5'- -----aGCGCCGCCGgcGUggGCgAUGg -3'
miRNA:   3'- acuaugCGCGGCGGCuuCGaaCG-UAC- -5'
24883 5' -54.2 NC_005284.1 + 49059 0.67 0.69048
Target:  5'- gUGGcggGCGCcuucuuguucaucGCCGCCGGAGCUgccacgUGCGa- -3'
miRNA:   3'- -ACUa--UGCG-------------CGGCGGCUUCGA------ACGUac -5'
24883 5' -54.2 NC_005284.1 + 9360 0.67 0.680502
Target:  5'- cGAcggGCGCGa-GCgCGAGGCUUGCGc- -3'
miRNA:   3'- aCUa--UGCGCggCG-GCUUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 8747 0.67 0.680502
Target:  5'- cGaAUACGCacaaGCCGCCGcAGCggcguucgGCGUGc -3'
miRNA:   3'- aC-UAUGCG----CGGCGGCuUCGaa------CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 47545 0.67 0.669369
Target:  5'- -cGUGCGCuCCGCauuGAAGCUgcucgacugcUGCAUGg -3'
miRNA:   3'- acUAUGCGcGGCGg--CUUCGA----------ACGUAC- -5'
24883 5' -54.2 NC_005284.1 + 50522 0.67 0.6582
Target:  5'- gGGUGCGaguCGCCGCCGcu-CUUGCGg- -3'
miRNA:   3'- aCUAUGC---GCGGCGGCuucGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 32213 0.67 0.6582
Target:  5'- cGaAUGUGCGCCGCCGAuAGCUcuucuucgaUGCGc- -3'
miRNA:   3'- aC-UAUGCGCGGCGGCU-UCGA---------ACGUac -5'
24883 5' -54.2 NC_005284.1 + 49386 0.68 0.647005
Target:  5'- cGAgcugGCGCGCCGCaCG-GGCaaGCAg- -3'
miRNA:   3'- aCUa---UGCGCGGCG-GCuUCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 42029 0.68 0.647005
Target:  5'- cGAgcGCGUGCCgGCCGA-GCg-GCAUGg -3'
miRNA:   3'- aCUa-UGCGCGG-CGGCUuCGaaCGUAC- -5'
24883 5' -54.2 NC_005284.1 + 8739 0.68 0.647005
Target:  5'- cGGaGCGCuuGCCGUCGAGGCcUGCu-- -3'
miRNA:   3'- aCUaUGCG--CGGCGGCUUCGaACGuac -5'
24883 5' -54.2 NC_005284.1 + 9595 0.68 0.647005
Target:  5'- cGAU-CGCGCUGCCGcGGCg-GCGa- -3'
miRNA:   3'- aCUAuGCGCGGCGGCuUCGaaCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.