Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24883 | 5' | -54.2 | NC_005284.1 | + | 9595 | 0.68 | 0.647005 |
Target: 5'- cGAU-CGCGCUGCCGcGGCg-GCGa- -3' miRNA: 3'- aCUAuGCGCGGCGGCuUCGaaCGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 40364 | 0.68 | 0.624586 |
Target: 5'- aGAU-CGauCCGCCGGAGCggUGCAg- -3' miRNA: 3'- aCUAuGCgcGGCGGCUUCGa-ACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 7701 | 0.68 | 0.613381 |
Target: 5'- -cGUGCGCGUgagcggugCGCCGAAGCUcgUGCc-- -3' miRNA: 3'- acUAUGCGCG--------GCGGCUUCGA--ACGuac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 48909 | 0.68 | 0.599959 |
Target: 5'- aGGUGucgcUGCGCCGCCucgaGAAGCUgagagagcuuggGCAUGc -3' miRNA: 3'- aCUAU----GCGCGGCGG----CUUCGAa-----------CGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 43940 | 0.69 | 0.557799 |
Target: 5'- cUGAUGCuGCGCgGCgaCGAgAGCUUGCGg- -3' miRNA: 3'- -ACUAUG-CGCGgCG--GCU-UCGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 7058 | 0.69 | 0.545741 |
Target: 5'- cUGcUACGCGCCgacguucaccgacGCCGAucGGCUUGCc-- -3' miRNA: 3'- -ACuAUGCGCGG-------------CGGCU--UCGAACGuac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 50763 | 0.7 | 0.525119 |
Target: 5'- uUGAU-CGCaGCCGUCGAGGUggaUGCGUu -3' miRNA: 3'- -ACUAuGCG-CGGCGGCUUCGa--ACGUAc -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 53888 | 0.7 | 0.503739 |
Target: 5'- gGAUGgGCgGCCGUCGucGCUUGCcuUGg -3' miRNA: 3'- aCUAUgCG-CGGCGGCuuCGAACGu-AC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 18482 | 0.71 | 0.462183 |
Target: 5'- gGGUGCGCGCCGagaaCGc-GCUcgGCGUGa -3' miRNA: 3'- aCUAUGCGCGGCg---GCuuCGAa-CGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 15440 | 0.71 | 0.462183 |
Target: 5'- uUGAgACGCGCUGCC-AAGCaUGCGa- -3' miRNA: 3'- -ACUaUGCGCGGCGGcUUCGaACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 31386 | 0.71 | 0.449067 |
Target: 5'- aGA-ACGCGCCGUCGcgguuccacuucauGGGCUUGCGc- -3' miRNA: 3'- aCUaUGCGCGGCGGC--------------UUCGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 10669 | 0.71 | 0.432231 |
Target: 5'- cUGGUGCGCGCCGCgGgcGCgaucgacacgGCGg- -3' miRNA: 3'- -ACUAUGCGCGGCGgCuuCGaa--------CGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 45005 | 0.72 | 0.375899 |
Target: 5'- uUGGcGCGCGCCGuuGcgacguGAGCUUGCGc- -3' miRNA: 3'- -ACUaUGCGCGGCggC------UUCGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 13458 | 1.08 | 0.001396 |
Target: 5'- cUGAUACGCGCCGCCGAAGCUUGCAUGc -3' miRNA: 3'- -ACUAUGCGCGGCGGCUUCGAACGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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