miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24883 5' -54.2 NC_005284.1 + 1184 0.66 0.745881
Target:  5'- cGAUA-GCGCCGCacuguacgaaaCGAuGCUgaccgGCAUGg -3'
miRNA:   3'- aCUAUgCGCGGCG-----------GCUuCGAa----CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 7058 0.69 0.545741
Target:  5'- cUGcUACGCGCCgacguucaccgacGCCGAucGGCUUGCc-- -3'
miRNA:   3'- -ACuAUGCGCGG-------------CGGCU--UCGAACGuac -5'
24883 5' -54.2 NC_005284.1 + 7701 0.68 0.613381
Target:  5'- -cGUGCGCGUgagcggugCGCCGAAGCUcgUGCc-- -3'
miRNA:   3'- acUAUGCGCG--------GCGGCUUCGA--ACGuac -5'
24883 5' -54.2 NC_005284.1 + 8739 0.68 0.647005
Target:  5'- cGGaGCGCuuGCCGUCGAGGCcUGCu-- -3'
miRNA:   3'- aCUaUGCG--CGGCGGCUUCGaACGuac -5'
24883 5' -54.2 NC_005284.1 + 8747 0.67 0.680502
Target:  5'- cGaAUACGCacaaGCCGCCGcAGCggcguucgGCGUGc -3'
miRNA:   3'- aC-UAUGCG----CGGCGGCuUCGaa------CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 9360 0.67 0.680502
Target:  5'- cGAcggGCGCGa-GCgCGAGGCUUGCGc- -3'
miRNA:   3'- aCUa--UGCGCggCG-GCUUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 9595 0.68 0.647005
Target:  5'- cGAU-CGCGCUGCCGcGGCg-GCGa- -3'
miRNA:   3'- aCUAuGCGCGGCGGCuUCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 10669 0.71 0.432231
Target:  5'- cUGGUGCGCGCCGCgGgcGCgaucgacacgGCGg- -3'
miRNA:   3'- -ACUAUGCGCGGCGgCuuCGaa--------CGUac -5'
24883 5' -54.2 NC_005284.1 + 13458 1.08 0.001396
Target:  5'- cUGAUACGCGCCGCCGAAGCUUGCAUGc -3'
miRNA:   3'- -ACUAUGCGCGGCGGCUUCGAACGUAC- -5'
24883 5' -54.2 NC_005284.1 + 13990 0.66 0.766846
Target:  5'- gUGAUgGCGCgGCUGCgCGGuaAGCgggGCGUGa -3'
miRNA:   3'- -ACUA-UGCG-CGGCG-GCU--UCGaa-CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 15440 0.71 0.462183
Target:  5'- uUGAgACGCGCUGCC-AAGCaUGCGa- -3'
miRNA:   3'- -ACUaUGCGCGGCGGcUUCGaACGUac -5'
24883 5' -54.2 NC_005284.1 + 17926 0.68 0.647005
Target:  5'- cGAacUGCGUGCaGCCGAGGCggacgcgGCAa- -3'
miRNA:   3'- aCU--AUGCGCGgCGGCUUCGaa-----CGUac -5'
24883 5' -54.2 NC_005284.1 + 18482 0.71 0.462183
Target:  5'- gGGUGCGCGCCGagaaCGc-GCUcgGCGUGa -3'
miRNA:   3'- aCUAUGCGCGGCg---GCuuCGAa-CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 21503 0.66 0.745881
Target:  5'- cUGcUugGCaugGCgGCCGgcGCUUGCGUc -3'
miRNA:   3'- -ACuAugCG---CGgCGGCuuCGAACGUAc -5'
24883 5' -54.2 NC_005284.1 + 21618 0.66 0.75643
Target:  5'- aGAUcucGCGCGCCgcgcucgacGCCGAgcAGCgUGCGa- -3'
miRNA:   3'- aCUA---UGCGCGG---------CGGCU--UCGaACGUac -5'
24883 5' -54.2 NC_005284.1 + 21842 0.67 0.702612
Target:  5'- -----aGCGCCGCCGgcGUggGCgAUGg -3'
miRNA:   3'- acuaugCGCGGCGGCuuCGaaCG-UAC- -5'
24883 5' -54.2 NC_005284.1 + 31386 0.71 0.449067
Target:  5'- aGA-ACGCGCCGUCGcgguuccacuucauGGGCUUGCGc- -3'
miRNA:   3'- aCUaUGCGCGGCGGC--------------UUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 31469 0.66 0.745881
Target:  5'- uUGAccgcCGUGCCGCCGGaaaAGCgcGCAUu -3'
miRNA:   3'- -ACUau--GCGCGGCGGCU---UCGaaCGUAc -5'
24883 5' -54.2 NC_005284.1 + 32213 0.67 0.6582
Target:  5'- cGaAUGUGCGCCGCCGAuAGCUcuucuucgaUGCGc- -3'
miRNA:   3'- aC-UAUGCGCGGCGGCU-UCGA---------ACGUac -5'
24883 5' -54.2 NC_005284.1 + 36907 0.66 0.724437
Target:  5'- gGAUGCGC-CCGCCGAuccggGGCcgGCc-- -3'
miRNA:   3'- aCUAUGCGcGGCGGCU-----UCGaaCGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.