Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24883 | 5' | -54.2 | NC_005284.1 | + | 40364 | 0.68 | 0.624586 |
Target: 5'- aGAU-CGauCCGCCGGAGCggUGCAg- -3' miRNA: 3'- aCUAuGCgcGGCGGCUUCGa-ACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 42029 | 0.68 | 0.647005 |
Target: 5'- cGAgcGCGUGCCgGCCGA-GCg-GCAUGg -3' miRNA: 3'- aCUa-UGCGCGG-CGGCUuCGaaCGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 43834 | 0.67 | 0.702612 |
Target: 5'- ----gUGCGCCGaUCGAAGCUUGUc-- -3' miRNA: 3'- acuauGCGCGGC-GGCUUCGAACGuac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 43940 | 0.69 | 0.557799 |
Target: 5'- cUGAUGCuGCGCgGCgaCGAgAGCUUGCGg- -3' miRNA: 3'- -ACUAUG-CGCGgCG--GCU-UCGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 45005 | 0.72 | 0.375899 |
Target: 5'- uUGGcGCGCGCCGuuGcgacguGAGCUUGCGc- -3' miRNA: 3'- -ACUaUGCGCGGCggC------UUCGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 47545 | 0.67 | 0.669369 |
Target: 5'- -cGUGCGCuCCGCauuGAAGCUgcucgacugcUGCAUGg -3' miRNA: 3'- acUAUGCGcGGCGg--CUUCGA----------ACGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 48255 | 0.66 | 0.766846 |
Target: 5'- cUGAcgGCGCGuuGCCGu-GCggGCAc- -3' miRNA: 3'- -ACUa-UGCGCggCGGCuuCGaaCGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 48909 | 0.68 | 0.599959 |
Target: 5'- aGGUGucgcUGCGCCGCCucgaGAAGCUgagagagcuuggGCAUGc -3' miRNA: 3'- aCUAU----GCGCGGCGG----CUUCGAa-----------CGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 49059 | 0.67 | 0.69048 |
Target: 5'- gUGGcggGCGCcuucuuguucaucGCCGCCGGAGCUgccacgUGCGa- -3' miRNA: 3'- -ACUa--UGCG-------------CGGCGGCUUCGA------ACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 49386 | 0.68 | 0.647005 |
Target: 5'- cGAgcugGCGCGCCGCaCG-GGCaaGCAg- -3' miRNA: 3'- aCUa---UGCGCGGCG-GCuUCGaaCGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 50331 | 0.66 | 0.735213 |
Target: 5'- gGcgGCGUGCCGCggCGAAccguGCUuucUGCGUGu -3' miRNA: 3'- aCuaUGCGCGGCG--GCUU----CGA---ACGUAC- -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 50522 | 0.67 | 0.6582 |
Target: 5'- gGGUGCGaguCGCCGCCGcu-CUUGCGg- -3' miRNA: 3'- aCUAUGC---GCGGCGGCuucGAACGUac -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 50763 | 0.7 | 0.525119 |
Target: 5'- uUGAU-CGCaGCCGUCGAGGUggaUGCGUu -3' miRNA: 3'- -ACUAuGCG-CGGCGGCUUCGa--ACGUAc -5' |
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24883 | 5' | -54.2 | NC_005284.1 | + | 53888 | 0.7 | 0.503739 |
Target: 5'- gGAUGgGCgGCCGUCGucGCUUGCcuUGg -3' miRNA: 3'- aCUAUgCG-CGGCGGCuuCGAACGu-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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