miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24883 5' -54.2 NC_005284.1 + 1184 0.66 0.745881
Target:  5'- cGAUA-GCGCCGCacuguacgaaaCGAuGCUgaccgGCAUGg -3'
miRNA:   3'- aCUAUgCGCGGCG-----------GCUuCGAa----CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 49386 0.68 0.647005
Target:  5'- cGAgcugGCGCGCCGCaCG-GGCaaGCAg- -3'
miRNA:   3'- aCUa---UGCGCGGCG-GCuUCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 47545 0.67 0.669369
Target:  5'- -cGUGCGCuCCGCauuGAAGCUgcucgacugcUGCAUGg -3'
miRNA:   3'- acUAUGCGcGGCGg--CUUCGA----------ACGUAC- -5'
24883 5' -54.2 NC_005284.1 + 8747 0.67 0.680502
Target:  5'- cGaAUACGCacaaGCCGCCGcAGCggcguucgGCGUGc -3'
miRNA:   3'- aC-UAUGCG----CGGCGGCuUCGaa------CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 9360 0.67 0.680502
Target:  5'- cGAcggGCGCGa-GCgCGAGGCUUGCGc- -3'
miRNA:   3'- aCUa--UGCGCggCG-GCUUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 21842 0.67 0.702612
Target:  5'- -----aGCGCCGCCGgcGUggGCgAUGg -3'
miRNA:   3'- acuaugCGCGGCGGCuuCGaaCG-UAC- -5'
24883 5' -54.2 NC_005284.1 + 43834 0.67 0.702612
Target:  5'- ----gUGCGCCGaUCGAAGCUUGUc-- -3'
miRNA:   3'- acuauGCGCGGC-GGCUUCGAACGuac -5'
24883 5' -54.2 NC_005284.1 + 50331 0.66 0.735213
Target:  5'- gGcgGCGUGCCGCggCGAAccguGCUuucUGCGUGu -3'
miRNA:   3'- aCuaUGCGCGGCG--GCUU----CGA---ACGUAC- -5'
24883 5' -54.2 NC_005284.1 + 21503 0.66 0.745881
Target:  5'- cUGcUugGCaugGCgGCCGgcGCUUGCGUc -3'
miRNA:   3'- -ACuAugCG---CGgCGGCuuCGAACGUAc -5'
24883 5' -54.2 NC_005284.1 + 42029 0.68 0.647005
Target:  5'- cGAgcGCGUGCCgGCCGA-GCg-GCAUGg -3'
miRNA:   3'- aCUa-UGCGCGG-CGGCUuCGaaCGUAC- -5'
24883 5' -54.2 NC_005284.1 + 9595 0.68 0.647005
Target:  5'- cGAU-CGCGCUGCCGcGGCg-GCGa- -3'
miRNA:   3'- aCUAuGCGCGGCGGCuUCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 40364 0.68 0.624586
Target:  5'- aGAU-CGauCCGCCGGAGCggUGCAg- -3'
miRNA:   3'- aCUAuGCgcGGCGGCUUCGa-ACGUac -5'
24883 5' -54.2 NC_005284.1 + 31386 0.71 0.449067
Target:  5'- aGA-ACGCGCCGUCGcgguuccacuucauGGGCUUGCGc- -3'
miRNA:   3'- aCUaUGCGCGGCGGC--------------UUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 18482 0.71 0.462183
Target:  5'- gGGUGCGCGCCGagaaCGc-GCUcgGCGUGa -3'
miRNA:   3'- aCUAUGCGCGGCg---GCuuCGAa-CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 53888 0.7 0.503739
Target:  5'- gGAUGgGCgGCCGUCGucGCUUGCcuUGg -3'
miRNA:   3'- aCUAUgCG-CGGCGGCuuCGAACGu-AC- -5'
24883 5' -54.2 NC_005284.1 + 50763 0.7 0.525119
Target:  5'- uUGAU-CGCaGCCGUCGAGGUggaUGCGUu -3'
miRNA:   3'- -ACUAuGCG-CGGCGGCUUCGa--ACGUAc -5'
24883 5' -54.2 NC_005284.1 + 7058 0.69 0.545741
Target:  5'- cUGcUACGCGCCgacguucaccgacGCCGAucGGCUUGCc-- -3'
miRNA:   3'- -ACuAUGCGCGG-------------CGGCU--UCGAACGuac -5'
24883 5' -54.2 NC_005284.1 + 43940 0.69 0.557799
Target:  5'- cUGAUGCuGCGCgGCgaCGAgAGCUUGCGg- -3'
miRNA:   3'- -ACUAUG-CGCGgCG--GCU-UCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 48909 0.68 0.599959
Target:  5'- aGGUGucgcUGCGCCGCCucgaGAAGCUgagagagcuuggGCAUGc -3'
miRNA:   3'- aCUAU----GCGCGGCGG----CUUCGAa-----------CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 7701 0.68 0.613381
Target:  5'- -cGUGCGCGUgagcggugCGCCGAAGCUcgUGCc-- -3'
miRNA:   3'- acUAUGCGCG--------GCGGCUUCGA--ACGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.