miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24883 5' -54.2 NC_005284.1 + 48909 0.68 0.599959
Target:  5'- aGGUGucgcUGCGCCGCCucgaGAAGCUgagagagcuuggGCAUGc -3'
miRNA:   3'- aCUAU----GCGCGGCGG----CUUCGAa-----------CGUAC- -5'
24883 5' -54.2 NC_005284.1 + 7701 0.68 0.613381
Target:  5'- -cGUGCGCGUgagcggugCGCCGAAGCUcgUGCc-- -3'
miRNA:   3'- acUAUGCGCG--------GCGGCUUCGA--ACGuac -5'
24883 5' -54.2 NC_005284.1 + 40364 0.68 0.624586
Target:  5'- aGAU-CGauCCGCCGGAGCggUGCAg- -3'
miRNA:   3'- aCUAuGCgcGGCGGCUUCGa-ACGUac -5'
24883 5' -54.2 NC_005284.1 + 9595 0.68 0.647005
Target:  5'- cGAU-CGCGCUGCCGcGGCg-GCGa- -3'
miRNA:   3'- aCUAuGCGCGGCGGCuUCGaaCGUac -5'
24883 5' -54.2 NC_005284.1 + 42029 0.68 0.647005
Target:  5'- cGAgcGCGUGCCgGCCGA-GCg-GCAUGg -3'
miRNA:   3'- aCUa-UGCGCGG-CGGCUuCGaaCGUAC- -5'
24883 5' -54.2 NC_005284.1 + 45005 0.72 0.375899
Target:  5'- uUGGcGCGCGCCGuuGcgacguGAGCUUGCGc- -3'
miRNA:   3'- -ACUaUGCGCGGCggC------UUCGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 15440 0.71 0.462183
Target:  5'- uUGAgACGCGCUGCC-AAGCaUGCGa- -3'
miRNA:   3'- -ACUaUGCGCGGCGGcUUCGaACGUac -5'
24883 5' -54.2 NC_005284.1 + 17926 0.68 0.647005
Target:  5'- cGAacUGCGUGCaGCCGAGGCggacgcgGCAa- -3'
miRNA:   3'- aCU--AUGCGCGgCGGCUUCGaa-----CGUac -5'
24883 5' -54.2 NC_005284.1 + 8739 0.68 0.647005
Target:  5'- cGGaGCGCuuGCCGUCGAGGCcUGCu-- -3'
miRNA:   3'- aCUaUGCG--CGGCGGCUUCGaACGuac -5'
24883 5' -54.2 NC_005284.1 + 32213 0.67 0.6582
Target:  5'- cGaAUGUGCGCCGCCGAuAGCUcuucuucgaUGCGc- -3'
miRNA:   3'- aC-UAUGCGCGGCGGCU-UCGA---------ACGUac -5'
24883 5' -54.2 NC_005284.1 + 50522 0.67 0.6582
Target:  5'- gGGUGCGaguCGCCGCCGcu-CUUGCGg- -3'
miRNA:   3'- aCUAUGC---GCGGCGGCuucGAACGUac -5'
24883 5' -54.2 NC_005284.1 + 49059 0.67 0.69048
Target:  5'- gUGGcggGCGCcuucuuguucaucGCCGCCGGAGCUgccacgUGCGa- -3'
miRNA:   3'- -ACUa--UGCG-------------CGGCGGCUUCGA------ACGUac -5'
24883 5' -54.2 NC_005284.1 + 36907 0.66 0.724437
Target:  5'- gGAUGCGC-CCGCCGAuccggGGCcgGCc-- -3'
miRNA:   3'- aCUAUGCGcGGCGGCU-----UCGaaCGuac -5'
24883 5' -54.2 NC_005284.1 + 13458 1.08 0.001396
Target:  5'- cUGAUACGCGCCGCCGAAGCUUGCAUGc -3'
miRNA:   3'- -ACUAUGCGCGGCGGCUUCGAACGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.