Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24884 | 3' | -60.2 | NC_005284.1 | + | 11509 | 1.12 | 0.000213 |
Target: 5'- aGCAGGCCGUCCGCGACCUCCUCGAGCu -3' miRNA: 3'- -CGUCCGGCAGGCGCUGGAGGAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 42100 | 0.77 | 0.089266 |
Target: 5'- uCAGGCCGUCCGCGGCCcgCUgggUGuAGCc -3' miRNA: 3'- cGUCCGGCAGGCGCUGGa-GGa--GC-UCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 39581 | 0.73 | 0.183629 |
Target: 5'- --cGGCCG-CUGCGuaguCCUCCgacgCGAGCg -3' miRNA: 3'- cguCCGGCaGGCGCu---GGAGGa---GCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 11815 | 0.72 | 0.198381 |
Target: 5'- aGCAGGUCGcgcgcgagCGCGGCUaUCUCGAGCa -3' miRNA: 3'- -CGUCCGGCag------GCGCUGGaGGAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 33599 | 0.72 | 0.198381 |
Target: 5'- uCAGGaCCGgcUCCGCGugCUCgaugagccguugCUCGAGCc -3' miRNA: 3'- cGUCC-GGC--AGGCGCugGAG------------GAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 23663 | 0.71 | 0.236852 |
Target: 5'- -gAGGCCGaCCGCGACaUCC-CGaAGCu -3' miRNA: 3'- cgUCCGGCaGGCGCUGgAGGaGC-UCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 35223 | 0.71 | 0.25517 |
Target: 5'- uGCGGGCCGUCUucgGUGuCgUagaUCUCGAGCa -3' miRNA: 3'- -CGUCCGGCAGG---CGCuGgA---GGAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 44389 | 0.7 | 0.281381 |
Target: 5'- --cGGCCGcCCGCGacGCCUCUugcuUCGuGCg -3' miRNA: 3'- cguCCGGCaGGCGC--UGGAGG----AGCuCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 9587 | 0.69 | 0.324628 |
Target: 5'- --cGuGCCGUUCGacaCGGCCgUCUUCGAGCg -3' miRNA: 3'- cguC-CGGCAGGC---GCUGG-AGGAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 10001 | 0.69 | 0.340103 |
Target: 5'- cGCuGGCCGagacggaCCGCGGCCUUgCgcaagcCGAGCg -3' miRNA: 3'- -CGuCCGGCa------GGCGCUGGAG-Ga-----GCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 25671 | 0.68 | 0.37263 |
Target: 5'- cGCA-GCCGUUCGCGcgagccaaGCCUCUgCGuGCa -3' miRNA: 3'- -CGUcCGGCAGGCGC--------UGGAGGaGCuCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 14966 | 0.68 | 0.381086 |
Target: 5'- cGCGcGCCGUUCgGCGGCUUCCU-GuGCg -3' miRNA: 3'- -CGUcCGGCAGG-CGCUGGAGGAgCuCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 45642 | 0.68 | 0.389669 |
Target: 5'- cCAuGCCGcgcgcgauagcaUCCGCGACacccggcaaCUCUUCGAGCa -3' miRNA: 3'- cGUcCGGC------------AGGCGCUG---------GAGGAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 6059 | 0.67 | 0.407209 |
Target: 5'- -gGGGgCGUCCGCGAgCgucaCCgaacuucCGAGCg -3' miRNA: 3'- cgUCCgGCAGGCGCUgGa---GGa------GCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 3049 | 0.67 | 0.416163 |
Target: 5'- cGCAGGCgCG-CCGCGAUCUUUcCGuacacGCg -3' miRNA: 3'- -CGUCCG-GCaGGCGCUGGAGGaGCu----CG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 45817 | 0.67 | 0.425236 |
Target: 5'- -aAGG-UGUCCGC-ACCgcaCUCGAGCa -3' miRNA: 3'- cgUCCgGCAGGCGcUGGag-GAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 46354 | 0.67 | 0.443731 |
Target: 5'- cGCGGGCuCG-CCG-GACCaUCUCG-GCa -3' miRNA: 3'- -CGUCCG-GCaGGCgCUGGaGGAGCuCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 37127 | 0.66 | 0.453146 |
Target: 5'- cGCAGGUagaCGcCCGUGAUCUCaUCGAcuccGCg -3' miRNA: 3'- -CGUCCG---GCaGGCGCUGGAGgAGCU----CG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 36854 | 0.66 | 0.462669 |
Target: 5'- gGCGGcGaUUGUCgGCG-CCUUgUCGAGCg -3' miRNA: 3'- -CGUC-C-GGCAGgCGCuGGAGgAGCUCG- -5' |
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24884 | 3' | -60.2 | NC_005284.1 | + | 29581 | 0.66 | 0.462669 |
Target: 5'- -gGGGCCcauagUCGCaACCUUUUCGGGCg -3' miRNA: 3'- cgUCCGGca---GGCGcUGGAGGAGCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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