Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 249 | 0.66 | 0.845647 |
Target: 5'- aGGGCuGaCAGAGGccgcuGUCGCGGCgcaagaugcgcugCCUGAu -3' miRNA: 3'- -CCUG-C-GUCUUUuu---CAGCGCCG-------------GGACU- -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 2617 | 0.67 | 0.787428 |
Target: 5'- gGGuACGCgAGAAAGcuccGGUCGgcgggugugcucauCGGCCUUGAg -3' miRNA: 3'- -CC-UGCG-UCUUUU----UCAGC--------------GCCGGGACU- -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 3502 | 0.68 | 0.717465 |
Target: 5'- aGGACGCcuuGAAAG-CGUGGCUCUa- -3' miRNA: 3'- -CCUGCGucuUUUUCaGCGCCGGGAcu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 11545 | 1.12 | 0.001118 |
Target: 5'- cGGACGCAGAAAAAGUCGCGGCCCUGAu -3' miRNA: 3'- -CCUGCGUCUUUUUCAGCGCCGGGACU- -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 13728 | 0.67 | 0.749486 |
Target: 5'- aGGCGCAGGAAA--UCGCaacGGCCCc-- -3' miRNA: 3'- cCUGCGUCUUUUucAGCG---CCGGGacu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 13975 | 0.69 | 0.673612 |
Target: 5'- aGGACGCucGAAAAAGUgauggCGCGGCUg--- -3' miRNA: 3'- -CCUGCGu-CUUUUUCA-----GCGCCGGgacu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 14600 | 0.67 | 0.749486 |
Target: 5'- aGGACGcCGGAGuuGGUCGCGacGCaCgUGGc -3' miRNA: 3'- -CCUGC-GUCUUuuUCAGCGC--CG-GgACU- -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 19054 | 0.74 | 0.407451 |
Target: 5'- cGGuCGCgaAGAAAGucgaaacAGUCGCGGCCCa-- -3' miRNA: 3'- -CCuGCG--UCUUUU-------UCAGCGCCGGGacu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 22133 | 0.66 | 0.809907 |
Target: 5'- cGAUGCGGGAGAGGcggcagCGUGGCgCUa- -3' miRNA: 3'- cCUGCGUCUUUUUCa-----GCGCCGgGAcu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 37943 | 0.68 | 0.728241 |
Target: 5'- -uGCGCuc--GGAGUCGUGGCCUUGu -3' miRNA: 3'- ccUGCGucuuUUUCAGCGCCGGGACu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 43271 | 0.71 | 0.562626 |
Target: 5'- uGGGCaGCucGAGGAGGUCGCGGacggCCUGc -3' miRNA: 3'- -CCUG-CGu-CUUUUUCAGCGCCg---GGACu -5' |
|||||||
24884 | 5' | -53.1 | NC_005284.1 | + | 43968 | 0.68 | 0.705512 |
Target: 5'- gGGA-GCAGAAGGAGcUCGCGggaugacGCCCUcGGg -3' miRNA: 3'- -CCUgCGUCUUUUUC-AGCGC-------CGGGA-CU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home