miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 10497 0.66 0.961538
Target:  5'- --uGCGCCGUCGGUgGucucggaugccgaucAGGCaGCGCUCg -3'
miRNA:   3'- aguUGUGGUAGUUAgU---------------UCUG-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 31080 0.66 0.959958
Target:  5'- gCGGCuCCAUCGA-CAGGAagcguaCGCGCgCg -3'
miRNA:   3'- aGUUGuGGUAGUUaGUUCU------GCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 43379 0.66 0.959958
Target:  5'- aUCGACGCagcgCGUCAagucccgcgcuGUCGAGGCGCGaCa -3'
miRNA:   3'- -AGUUGUG----GUAGU-----------UAGUUCUGCGCgGg -5'
24885 3' -49.6 NC_005284.1 + 8455 0.66 0.959958
Target:  5'- cUCGACGuguugCAGUC-GGGCGuCGCCCa -3'
miRNA:   3'- -AGUUGUggua-GUUAGuUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 12434 0.66 0.959958
Target:  5'- gUCAgcGCGCCAguuUCGAUCGAGG-GCGgaucgucgaacCCCg -3'
miRNA:   3'- -AGU--UGUGGU---AGUUAGUUCUgCGC-----------GGG- -5'
24885 3' -49.6 NC_005284.1 + 3973 0.66 0.959958
Target:  5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3'
miRNA:   3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 44325 0.66 0.959958
Target:  5'- gUCGGCACCAUgAcaCuuuGCGCcGCCCg -3'
miRNA:   3'- -AGUUGUGGUAgUuaGuucUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 9290 0.66 0.959958
Target:  5'- aCGACgAUCGggCAGaCGAuGACGCGCCUg -3'
miRNA:   3'- aGUUG-UGGUa-GUUaGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7407 0.66 0.955813
Target:  5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3'
miRNA:   3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6773 0.66 0.955813
Target:  5'- aCGACACgGUCAcgCGcGuCaCGCCCg -3'
miRNA:   3'- aGUUGUGgUAGUuaGUuCuGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5826 0.66 0.955813
Target:  5'- gCAGCACCgcuucGUCGAUgcaguccgcCGGGGCaUGCCCa -3'
miRNA:   3'- aGUUGUGG-----UAGUUA---------GUUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 17406 0.66 0.955813
Target:  5'- gCAACugCGUgcuUC-AGACGCGCgCg -3'
miRNA:   3'- aGUUGugGUAguuAGuUCUGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 11627 0.66 0.951386
Target:  5'- cUCGACGgCGUCGucaauGUCAccgcAGACGUcCCCu -3'
miRNA:   3'- -AGUUGUgGUAGU-----UAGU----UCUGCGcGGG- -5'
24885 3' -49.6 NC_005284.1 + 8182 0.66 0.951386
Target:  5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3'
miRNA:   3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 45593 0.66 0.951386
Target:  5'- gUCAGCuuucccucuucgGCCAUCGAuUUGAGcUGCGCCg -3'
miRNA:   3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 44482 0.66 0.951386
Target:  5'- gCGGCGCCugcauGUCGAUCAGacucGACGuCGCgCu -3'
miRNA:   3'- aGUUGUGG-----UAGUUAGUU----CUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 48881 0.66 0.951386
Target:  5'- gUCGGCGCCGU------GGACaCGCCCg -3'
miRNA:   3'- -AGUUGUGGUAguuaguUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 21806 0.66 0.951386
Target:  5'- aCGGCAgCCGgugg-CGAcGGCGUGCCCg -3'
miRNA:   3'- aGUUGU-GGUaguuaGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 30251 0.66 0.951386
Target:  5'- gUCG--GCCGUCGAgc-GGGCGCGUUCg -3'
miRNA:   3'- -AGUugUGGUAGUUaguUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 32942 0.66 0.950928
Target:  5'- gCGGCACCAUCGccCAcgccggcggcgcuGGAaGCGCCg -3'
miRNA:   3'- aGUUGUGGUAGUuaGU-------------UCUgCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.