Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24885 | 3' | -49.6 | NC_005284.1 | + | 48740 | 0.68 | 0.875362 |
Target: 5'- aUCAGagaACCAUCAAcccgCGcGGCGUGCgCCg -3' miRNA: 3'- -AGUUg--UGGUAGUUa---GUuCUGCGCG-GG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47753 | 0.67 | 0.931341 |
Target: 5'- gCGGCGCgCGUacguccgcguaagcaGAUCGAGGCGgCGCUCg -3' miRNA: 3'- aGUUGUG-GUAg--------------UUAGUUCUGC-GCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 7114 | 0.67 | 0.936365 |
Target: 5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3' miRNA: 3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 44259 | 0.67 | 0.930767 |
Target: 5'- cCGGCGaggaAUCGAUCGAG-CGCuGCCUg -3' miRNA: 3'- aGUUGUgg--UAGUUAGUUCuGCG-CGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 7676 | 0.67 | 0.930767 |
Target: 5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3' miRNA: 3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 21571 | 0.67 | 0.924871 |
Target: 5'- aCAGCGCCGUgugcuuGUCgAAGugGCGCa- -3' miRNA: 3'- aGUUGUGGUAgu----UAG-UUCugCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 33618 | 0.67 | 0.918676 |
Target: 5'- cUCGAUgaGCCGUUGcUCGAGcCGCGCgCg -3' miRNA: 3'- -AGUUG--UGGUAGUuAGUUCuGCGCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 8528 | 0.67 | 0.918676 |
Target: 5'- cCGACAUCGgaCGcgCGuAGAUGCGUCCa -3' miRNA: 3'- aGUUGUGGUa-GUuaGU-UCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6543 | 0.67 | 0.918676 |
Target: 5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3' miRNA: 3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47127 | 0.67 | 0.918676 |
Target: 5'- aUCAGC-CCAUUGAcc--GACGCcGCCCa -3' miRNA: 3'- -AGUUGuGGUAGUUaguuCUGCG-CGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 12987 | 0.67 | 0.936365 |
Target: 5'- aCGAUGCCAcCGAUCG-GACGCauaaagaaGCCUa -3' miRNA: 3'- aGUUGUGGUaGUUAGUuCUGCG--------CGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 49264 | 0.67 | 0.936365 |
Target: 5'- cCAACACCcuGUCAAaaaaauGAC-CGCCCg -3' miRNA: 3'- aGUUGUGG--UAGUUaguu--CUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 32014 | 0.67 | 0.930767 |
Target: 5'- ---cCGCCGUCGu---AGACauGCGCCCa -3' miRNA: 3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 35254 | 0.67 | 0.930767 |
Target: 5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3' miRNA: 3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5716 | 0.67 | 0.918676 |
Target: 5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3' miRNA: 3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 47282 | 0.67 | 0.918041 |
Target: 5'- aUCGACgGCCGUCGccgcgugAUCAAcGCGCGCg- -3' miRNA: 3'- -AGUUG-UGGUAGU-------UAGUUcUGCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 17016 | 0.67 | 0.912184 |
Target: 5'- cCGACGCgAUCAacGUCGAGGCGauuaCCg -3' miRNA: 3'- aGUUGUGgUAGU--UAGUUCUGCgcg-GG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 1463 | 0.67 | 0.912184 |
Target: 5'- gCAGCAgCGUgCGAUUAAGucuGCGCGCUUc -3' miRNA: 3'- aGUUGUgGUA-GUUAGUUC---UGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6964 | 0.67 | 0.934162 |
Target: 5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3' miRNA: 3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5077 | 0.67 | 0.936365 |
Target: 5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3' miRNA: 3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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