Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24885 | 3' | -49.6 | NC_005284.1 | + | 45593 | 0.66 | 0.951386 |
Target: 5'- gUCAGCuuucccucuucgGCCAUCGAuUUGAGcUGCGCCg -3' miRNA: 3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 8182 | 0.66 | 0.951386 |
Target: 5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3' miRNA: 3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 11627 | 0.66 | 0.951386 |
Target: 5'- cUCGACGgCGUCGucaauGUCAccgcAGACGUcCCCu -3' miRNA: 3'- -AGUUGUgGUAGU-----UAGU----UCUGCGcGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 44482 | 0.66 | 0.951386 |
Target: 5'- gCGGCGCCugcauGUCGAUCAGacucGACGuCGCgCu -3' miRNA: 3'- aGUUGUGG-----UAGUUAGUU----CUGC-GCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5826 | 0.66 | 0.955813 |
Target: 5'- gCAGCACCgcuucGUCGAUgcaguccgcCGGGGCaUGCCCa -3' miRNA: 3'- aGUUGUGG-----UAGUUA---------GUUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6773 | 0.66 | 0.955813 |
Target: 5'- aCGACACgGUCAcgCGcGuCaCGCCCg -3' miRNA: 3'- aGUUGUGgUAGUuaGUuCuGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 7407 | 0.66 | 0.955813 |
Target: 5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3' miRNA: 3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 44325 | 0.66 | 0.959958 |
Target: 5'- gUCGGCACCAUgAcaCuuuGCGCcGCCCg -3' miRNA: 3'- -AGUUGUGGUAgUuaGuucUGCG-CGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3973 | 0.66 | 0.959958 |
Target: 5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3' miRNA: 3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 10497 | 0.66 | 0.961538 |
Target: 5'- --uGCGCCGUCGGUgGucucggaugccgaucAGGCaGCGCUCg -3' miRNA: 3'- aguUGUGGUAGUUAgU---------------UCUG-CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 43379 | 0.66 | 0.959958 |
Target: 5'- aUCGACGCagcgCGUCAagucccgcgcuGUCGAGGCGCGaCa -3' miRNA: 3'- -AGUUGUG----GUAGU-----------UAGUUCUGCGCgGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 31080 | 0.66 | 0.959958 |
Target: 5'- gCGGCuCCAUCGA-CAGGAagcguaCGCGCgCg -3' miRNA: 3'- aGUUGuGGUAGUUaGUUCU------GCGCGgG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 9290 | 0.66 | 0.959958 |
Target: 5'- aCGACgAUCGggCAGaCGAuGACGCGCCUg -3' miRNA: 3'- aGUUG-UGGUa-GUUaGUU-CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 12434 | 0.66 | 0.959958 |
Target: 5'- gUCAgcGCGCCAguuUCGAUCGAGG-GCGgaucgucgaacCCCg -3' miRNA: 3'- -AGU--UGUGGU---AGUUAGUUCUgCGC-----------GGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 44061 | 0.66 | 0.941666 |
Target: 5'- gCAGCAuCCAUUGcggCGAGugccuGCGCGCCUu -3' miRNA: 3'- aGUUGU-GGUAGUua-GUUC-----UGCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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