miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 10619 1.13 0.002228
Target:  5'- uUCAACACCAUCAAUCAAGACGCGCCCc -3'
miRNA:   3'- -AGUUGUGGUAGUUAGUUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 38614 0.8 0.280777
Target:  5'- cCAGCGCCAUCGAcgcgccgagccccaUCAGcGAUGUGCCCc -3'
miRNA:   3'- aGUUGUGGUAGUU--------------AGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 11904 0.8 0.290486
Target:  5'- cUCGGCAUCGUCcAUCGAGAgGCccGCCCa -3'
miRNA:   3'- -AGUUGUGGUAGuUAGUUCUgCG--CGGG- -5'
24885 3' -49.6 NC_005284.1 + 52646 0.77 0.431254
Target:  5'- aCAGCACCGUCAAUCuuguuGuCGuUGCCCu -3'
miRNA:   3'- aGUUGUGGUAGUUAGuu---CuGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 23484 0.75 0.525979
Target:  5'- aCAACACUGUCGAUCcggcGugGCGCgCg -3'
miRNA:   3'- aGUUGUGGUAGUUAGuu--CugCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 22753 0.75 0.537021
Target:  5'- gCGGCugCgGUCGAUCAAGGgGCGCgCg -3'
miRNA:   3'- aGUUGugG-UAGUUAGUUCUgCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 49635 0.73 0.616062
Target:  5'- aUCGACGCCcaGUCGAucggauUCAGGACGauCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU------AGUUCUGCgcGGG- -5'
24885 3' -49.6 NC_005284.1 + 47796 0.73 0.627493
Target:  5'- -gAGCGCCAU--GUCGAG-CGCGCCa -3'
miRNA:   3'- agUUGUGGUAguUAGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 54069 0.73 0.627493
Target:  5'- cCAGCACaa-CGAUCAcGACGCGgCCa -3'
miRNA:   3'- aGUUGUGguaGUUAGUuCUGCGCgGG- -5'
24885 3' -49.6 NC_005284.1 + 42564 0.73 0.638929
Target:  5'- -gGAUGCUGUCGcUCGuGGACGUGCCCg -3'
miRNA:   3'- agUUGUGGUAGUuAGU-UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 41540 0.73 0.650357
Target:  5'- uUCAGCACguUCAGUUGAGACagguCGCCg -3'
miRNA:   3'- -AGUUGUGguAGUUAGUUCUGc---GCGGg -5'
24885 3' -49.6 NC_005284.1 + 36864 0.73 0.660628
Target:  5'- gUCGGCGCCuuGUCGAgcgugauccuuUCGccagccgcugcgcGGAUGCGCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU-----------AGU-------------UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7516 0.72 0.695774
Target:  5'- gCGACgGCCGUCGAUCAcGAgGUucucGCCCg -3'
miRNA:   3'- aGUUG-UGGUAGUUAGUuCUgCG----CGGG- -5'
24885 3' -49.6 NC_005284.1 + 37075 0.72 0.703634
Target:  5'- cUCGAcCGCCAUCGAcgcgccggcgagauUCAGGGCGuCGCgCa -3'
miRNA:   3'- -AGUU-GUGGUAGUU--------------AGUUCUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 35056 0.72 0.705874
Target:  5'- aCAGCGugucguuCCGUCGAgcaUGAGGCGCGCCg -3'
miRNA:   3'- aGUUGU-------GGUAGUUa--GUUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 6640 0.72 0.718132
Target:  5'- uUCAGCAgCAcuUCGGcagaAAGACGCGCCg -3'
miRNA:   3'- -AGUUGUgGU--AGUUag--UUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 35994 0.72 0.718132
Target:  5'- cCGACguuGCCGgacguGUCGaccAGGCGCGCCCa -3'
miRNA:   3'- aGUUG---UGGUagu--UAGU---UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 34100 0.71 0.750948
Target:  5'- cCAACACCAUgAAUCGAua-GUGCCa -3'
miRNA:   3'- aGUUGUGGUAgUUAGUUcugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 49143 0.71 0.761643
Target:  5'- -aGGCGCgCGUC-GUCAaggcGGACGgGCCCg -3'
miRNA:   3'- agUUGUG-GUAGuUAGU----UCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 26348 0.71 0.761643
Target:  5'- gCGGCACgGUCAAcgccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUAGUUaguuCUGCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.