miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 49143 0.71 0.761643
Target:  5'- -aGGCGCgCGUC-GUCAaggcGGACGgGCCCg -3'
miRNA:   3'- agUUGUG-GUAGuUAGU----UCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 17579 0.71 0.769045
Target:  5'- gUCAACACCGacaUCGgcgucagcuacgcgAUCccgcguGAGaACGCGCCCa -3'
miRNA:   3'- -AGUUGUGGU---AGU--------------UAG------UUC-UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5895 0.7 0.792817
Target:  5'- gCGACACCuUCGccgCcGGGCGUGUCCa -3'
miRNA:   3'- aGUUGUGGuAGUua-GuUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 41903 0.7 0.792817
Target:  5'- aCuGCGCCGUC-AUCuguAGACGgCGCCg -3'
miRNA:   3'- aGuUGUGGUAGuUAGu--UCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 11038 0.7 0.792817
Target:  5'- cCAACAUCGaCAAUCu-GACGCGCg- -3'
miRNA:   3'- aGUUGUGGUaGUUAGuuCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 44924 0.7 0.801866
Target:  5'- gCGGCuGCCGUCucgcgagcgauGAUCGccgcguaGGGCGUGCCCg -3'
miRNA:   3'- aGUUG-UGGUAG-----------UUAGU-------UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47271 0.7 0.802863
Target:  5'- uUCGACugguaauuGCCGUCGAcCGAGAauuCGCCCg -3'
miRNA:   3'- -AGUUG--------UGGUAGUUaGUUCUgc-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 10922 0.7 0.812716
Target:  5'- aCGACGCgCGgaUC-AUCAAcGGCGCGCUCa -3'
miRNA:   3'- aGUUGUG-GU--AGuUAGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47944 0.69 0.831797
Target:  5'- --cACACgAUCGAUCGc-GCGCGCCa -3'
miRNA:   3'- aguUGUGgUAGUUAGUucUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 42341 0.69 0.831797
Target:  5'- uUCGACgauccGCCcUCGAUCGAaacuGGCGCGCUg -3'
miRNA:   3'- -AGUUG-----UGGuAGUUAGUU----CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 31602 0.69 0.858693
Target:  5'- gCAGCugcaGCCAUCAcaCGAGcggaACGCGCCg -3'
miRNA:   3'- aGUUG----UGGUAGUuaGUUC----UGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 15090 0.69 0.858693
Target:  5'- aCuGCGCCGUCugccUCGcGGCGCGCUUg -3'
miRNA:   3'- aGuUGUGGUAGuu--AGUuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 27281 0.69 0.858693
Target:  5'- cUCGACGcgcCCAUCGAUCAucgccaccguGGGCGCaagauaGUCCg -3'
miRNA:   3'- -AGUUGU---GGUAGUUAGU----------UCUGCG------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 51794 0.69 0.870473
Target:  5'- cCAGCACCAUCGuuuucccggccugCAuGGCGcCGCCa -3'
miRNA:   3'- aGUUGUGGUAGUua-----------GUuCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 48740 0.68 0.875362
Target:  5'- aUCAGagaACCAUCAAcccgCGcGGCGUGCgCCg -3'
miRNA:   3'- -AGUUg--UGGUAGUUa---GUuCUGCGCG-GG- -5'
24885 3' -49.6 NC_005284.1 + 24922 0.68 0.883293
Target:  5'- cCGGCGCCGacCAucgCGAGAUGCGUCg -3'
miRNA:   3'- aGUUGUGGUa-GUua-GUUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 23328 0.68 0.883293
Target:  5'- gCGGCACgG-CGGUCAAuugggggcccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUaGUUAGUU----------CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 10865 0.68 0.890947
Target:  5'- cCGACGUCAUCGGUau-GACG-GCCCg -3'
miRNA:   3'- aGUUGUGGUAGUUAguuCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 9804 0.68 0.898316
Target:  5'- cCAACgucGCCggCAGUCAGGaaaucgGCGCGCgCa -3'
miRNA:   3'- aGUUG---UGGuaGUUAGUUC------UGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 43049 0.68 0.905397
Target:  5'- cCAGCguGCCGUCcuuUC---GCGCGCCCu -3'
miRNA:   3'- aGUUG--UGGUAGuu-AGuucUGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.