miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 3677 0.66 0.948592
Target:  5'- -uGGCGCCGggggcauuuucaaaCAGUCucGAUGCGCUCa -3'
miRNA:   3'- agUUGUGGUa-------------GUUAGuuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 27794 0.66 0.946672
Target:  5'- --cGCGCCcuuuUCGGaCGAGugGCGUGCCCg -3'
miRNA:   3'- aguUGUGGu---AGUUaGUUC--UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 3274 0.66 0.946672
Target:  5'- uUC-ACGCCAUCAgcGUCcc-GCGUGUCCc -3'
miRNA:   3'- -AGuUGUGGUAGU--UAGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44061 0.66 0.941666
Target:  5'- gCAGCAuCCAUUGcggCGAGugccuGCGCGCCUu -3'
miRNA:   3'- aGUUGU-GGUAGUua-GUUC-----UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 33782 0.66 0.941666
Target:  5'- cCGGCGCCGacuUCGuaGUCGAu-CGCGCCg -3'
miRNA:   3'- aGUUGUGGU---AGU--UAGUUcuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 22350 0.66 0.941666
Target:  5'- uUCAGCACCAUC--UCgAAGAguucgUGCGUCa -3'
miRNA:   3'- -AGUUGUGGUAGuuAG-UUCU-----GCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 49264 0.67 0.936365
Target:  5'- cCAACACCcuGUCAAaaaaauGAC-CGCCCg -3'
miRNA:   3'- aGUUGUGG--UAGUUaguu--CUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5077 0.67 0.936365
Target:  5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3'
miRNA:   3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 12987 0.67 0.936365
Target:  5'- aCGAUGCCAcCGAUCG-GACGCauaaagaaGCCUa -3'
miRNA:   3'- aGUUGUGGUaGUUAGUuCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7114 0.67 0.936365
Target:  5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3'
miRNA:   3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6964 0.67 0.934162
Target:  5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3'
miRNA:   3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47753 0.67 0.931341
Target:  5'- gCGGCGCgCGUacguccgcguaagcaGAUCGAGGCGgCGCUCg -3'
miRNA:   3'- aGUUGUG-GUAg--------------UUAGUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 35254 0.67 0.930767
Target:  5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3'
miRNA:   3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 32014 0.67 0.930767
Target:  5'- ---cCGCCGUCGu---AGACauGCGCCCa -3'
miRNA:   3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44259 0.67 0.930767
Target:  5'- cCGGCGaggaAUCGAUCGAG-CGCuGCCUg -3'
miRNA:   3'- aGUUGUgg--UAGUUAGUUCuGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7676 0.67 0.930767
Target:  5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3'
miRNA:   3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 33812 0.67 0.930767
Target:  5'- uUCGuaauCGCCcgCAcgCAGGAgaguUGCGCCUc -3'
miRNA:   3'- -AGUu---GUGGuaGUuaGUUCU----GCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 30356 0.67 0.924871
Target:  5'- aUCGAgGCgAUCGAgcgCGAgggcGAUGCGCUCg -3'
miRNA:   3'- -AGUUgUGgUAGUUa--GUU----CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 21571 0.67 0.924871
Target:  5'- aCAGCGCCGUgugcuuGUCgAAGugGCGCa- -3'
miRNA:   3'- aGUUGUGGUAgu----UAG-UUCugCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 20051 0.67 0.923044
Target:  5'- uUCGACGCCGaacuaucaacucguUCAGUCGauGGugGCGauaUCg -3'
miRNA:   3'- -AGUUGUGGU--------------AGUUAGU--UCugCGCg--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.