miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 5716 0.67 0.918676
Target:  5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3'
miRNA:   3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 33618 0.67 0.918676
Target:  5'- cUCGAUgaGCCGUUGcUCGAGcCGCGCgCg -3'
miRNA:   3'- -AGUUG--UGGUAGUuAGUUCuGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 8528 0.67 0.918676
Target:  5'- cCGACAUCGgaCGcgCGuAGAUGCGUCCa -3'
miRNA:   3'- aGUUGUGGUa-GUuaGU-UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6543 0.67 0.918676
Target:  5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3'
miRNA:   3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 47127 0.67 0.918676
Target:  5'- aUCAGC-CCAUUGAcc--GACGCcGCCCa -3'
miRNA:   3'- -AGUUGuGGUAGUUaguuCUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 14960 0.67 0.918676
Target:  5'- aUCGgccGCGCCAUgCAAUgCGGcACGCgGCCCg -3'
miRNA:   3'- -AGU---UGUGGUA-GUUA-GUUcUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 32763 0.67 0.918676
Target:  5'- uUCAGgAUCGUCGcgCuc-GCGCGCCUc -3'
miRNA:   3'- -AGUUgUGGUAGUuaGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47282 0.67 0.918041
Target:  5'- aUCGACgGCCGUCGccgcgugAUCAAcGCGCGCg- -3'
miRNA:   3'- -AGUUG-UGGUAGU-------UAGUUcUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 37002 0.67 0.91676
Target:  5'- aCGACACCGUCccGGUCucguaccgcGACgucagcagcagccaGCGCCCg -3'
miRNA:   3'- aGUUGUGGUAG--UUAGuu-------CUG--------------CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 1463 0.67 0.912184
Target:  5'- gCAGCAgCGUgCGAUUAAGucuGCGCGCUUc -3'
miRNA:   3'- aGUUGUgGUA-GUUAGUUC---UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44103 0.67 0.912184
Target:  5'- gCGAgGCCcgCcguGUCGAu-CGCGCCCg -3'
miRNA:   3'- aGUUgUGGuaGu--UAGUUcuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 40235 0.67 0.912184
Target:  5'- aCAGCGCCGaaaUCGuUCcguuGAUGuCGCCCa -3'
miRNA:   3'- aGUUGUGGU---AGUuAGuu--CUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 17016 0.67 0.912184
Target:  5'- cCGACGCgAUCAacGUCGAGGCGauuaCCg -3'
miRNA:   3'- aGUUGUGgUAGU--UAGUUCUGCgcg-GG- -5'
24885 3' -49.6 NC_005284.1 + 53541 0.67 0.910179
Target:  5'- --cGCGCCcgCAGUCGugaugaugaacaugAGcggcugccggcGCGCGCCCa -3'
miRNA:   3'- aguUGUGGuaGUUAGU--------------UC-----------UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 43049 0.68 0.905397
Target:  5'- cCAGCguGCCGUCcuuUC---GCGCGCCCu -3'
miRNA:   3'- aGUUG--UGGUAGuu-AGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 4925 0.68 0.905397
Target:  5'- cCGGCACUG-CAAUCGuauaucgacGGcCGUGCCCg -3'
miRNA:   3'- aGUUGUGGUaGUUAGU---------UCuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 9804 0.68 0.898316
Target:  5'- cCAACgucGCCggCAGUCAGGaaaucgGCGCGCgCa -3'
miRNA:   3'- aGUUG---UGGuaGUUAGUUC------UGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 10865 0.68 0.890947
Target:  5'- cCGACGUCAUCGGUau-GACG-GCCCg -3'
miRNA:   3'- aGUUGUGGUAGUUAguuCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 24922 0.68 0.883293
Target:  5'- cCGGCGCCGacCAucgCGAGAUGCGUCg -3'
miRNA:   3'- aGUUGUGGUa-GUua-GUUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 23328 0.68 0.883293
Target:  5'- gCGGCACgG-CGGUCAAuugggggcccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUaGUUAGUU----------CUGCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.