miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 1463 0.67 0.912184
Target:  5'- gCAGCAgCGUgCGAUUAAGucuGCGCGCUUc -3'
miRNA:   3'- aGUUGUgGUA-GUUAGUUC---UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 3274 0.66 0.946672
Target:  5'- uUC-ACGCCAUCAgcGUCcc-GCGUGUCCc -3'
miRNA:   3'- -AGuUGUGGUAGU--UAGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 3677 0.66 0.948592
Target:  5'- -uGGCGCCGggggcauuuucaaaCAGUCucGAUGCGCUCa -3'
miRNA:   3'- agUUGUGGUa-------------GUUAGuuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 3973 0.66 0.959958
Target:  5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3'
miRNA:   3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 4925 0.68 0.905397
Target:  5'- cCGGCACUG-CAAUCGuauaucgacGGcCGUGCCCg -3'
miRNA:   3'- aGUUGUGGUaGUUAGU---------UCuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5077 0.67 0.936365
Target:  5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3'
miRNA:   3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5716 0.67 0.918676
Target:  5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3'
miRNA:   3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5826 0.66 0.955813
Target:  5'- gCAGCACCgcuucGUCGAUgcaguccgcCGGGGCaUGCCCa -3'
miRNA:   3'- aGUUGUGG-----UAGUUA---------GUUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5895 0.7 0.792817
Target:  5'- gCGACACCuUCGccgCcGGGCGUGUCCa -3'
miRNA:   3'- aGUUGUGGuAGUua-GuUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6543 0.67 0.918676
Target:  5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3'
miRNA:   3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 6640 0.72 0.718132
Target:  5'- uUCAGCAgCAcuUCGGcagaAAGACGCGCCg -3'
miRNA:   3'- -AGUUGUgGU--AGUUag--UUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 6773 0.66 0.955813
Target:  5'- aCGACACgGUCAcgCGcGuCaCGCCCg -3'
miRNA:   3'- aGUUGUGgUAGUuaGUuCuGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6964 0.67 0.934162
Target:  5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3'
miRNA:   3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7114 0.67 0.936365
Target:  5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3'
miRNA:   3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7407 0.66 0.955813
Target:  5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3'
miRNA:   3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7516 0.72 0.695774
Target:  5'- gCGACgGCCGUCGAUCAcGAgGUucucGCCCg -3'
miRNA:   3'- aGUUG-UGGUAGUUAGUuCUgCG----CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7676 0.67 0.930767
Target:  5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3'
miRNA:   3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 8182 0.66 0.951386
Target:  5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3'
miRNA:   3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 8455 0.66 0.959958
Target:  5'- cUCGACGuguugCAGUC-GGGCGuCGCCCa -3'
miRNA:   3'- -AGUUGUggua-GUUAGuUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 8528 0.67 0.918676
Target:  5'- cCGACAUCGgaCGcgCGuAGAUGCGUCCa -3'
miRNA:   3'- aGUUGUGGUa-GUuaGU-UCUGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.