miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 22753 0.75 0.537021
Target:  5'- gCGGCugCgGUCGAUCAAGGgGCGCgCg -3'
miRNA:   3'- aGUUGugG-UAGUUAGUUCUgCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 23328 0.68 0.883293
Target:  5'- gCGGCACgG-CGGUCAAuugggggcccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUaGUUAGUU----------CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 23484 0.75 0.525979
Target:  5'- aCAACACUGUCGAUCcggcGugGCGCgCg -3'
miRNA:   3'- aGUUGUGGUAGUUAGuu--CugCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 24922 0.68 0.883293
Target:  5'- cCGGCGCCGacCAucgCGAGAUGCGUCg -3'
miRNA:   3'- aGUUGUGGUa-GUua-GUUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 26348 0.71 0.761643
Target:  5'- gCGGCACgGUCAAcgccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUAGUUaguuCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 27281 0.69 0.858693
Target:  5'- cUCGACGcgcCCAUCGAUCAucgccaccguGGGCGCaagauaGUCCg -3'
miRNA:   3'- -AGUUGU---GGUAGUUAGU----------UCUGCG------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 27794 0.66 0.946672
Target:  5'- --cGCGCCcuuuUCGGaCGAGugGCGUGCCCg -3'
miRNA:   3'- aguUGUGGu---AGUUaGUUC--UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 30251 0.66 0.951386
Target:  5'- gUCG--GCCGUCGAgc-GGGCGCGUUCg -3'
miRNA:   3'- -AGUugUGGUAGUUaguUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 30356 0.67 0.924871
Target:  5'- aUCGAgGCgAUCGAgcgCGAgggcGAUGCGCUCg -3'
miRNA:   3'- -AGUUgUGgUAGUUa--GUU----CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 31080 0.66 0.959958
Target:  5'- gCGGCuCCAUCGA-CAGGAagcguaCGCGCgCg -3'
miRNA:   3'- aGUUGuGGUAGUUaGUUCU------GCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 31602 0.69 0.858693
Target:  5'- gCAGCugcaGCCAUCAcaCGAGcggaACGCGCCg -3'
miRNA:   3'- aGUUG----UGGUAGUuaGUUC----UGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 32014 0.67 0.930767
Target:  5'- ---cCGCCGUCGu---AGACauGCGCCCa -3'
miRNA:   3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 32763 0.67 0.918676
Target:  5'- uUCAGgAUCGUCGcgCuc-GCGCGCCUc -3'
miRNA:   3'- -AGUUgUGGUAGUuaGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 32942 0.66 0.950928
Target:  5'- gCGGCACCAUCGccCAcgccggcggcgcuGGAaGCGCCg -3'
miRNA:   3'- aGUUGUGGUAGUuaGU-------------UCUgCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 33618 0.67 0.918676
Target:  5'- cUCGAUgaGCCGUUGcUCGAGcCGCGCgCg -3'
miRNA:   3'- -AGUUG--UGGUAGUuAGUUCuGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 33782 0.66 0.941666
Target:  5'- cCGGCGCCGacuUCGuaGUCGAu-CGCGCCg -3'
miRNA:   3'- aGUUGUGGU---AGU--UAGUUcuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 33812 0.67 0.930767
Target:  5'- uUCGuaauCGCCcgCAcgCAGGAgaguUGCGCCUc -3'
miRNA:   3'- -AGUu---GUGGuaGUuaGUUCU----GCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 34100 0.71 0.750948
Target:  5'- cCAACACCAUgAAUCGAua-GUGCCa -3'
miRNA:   3'- aGUUGUGGUAgUUAGUUcugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 34414 0.71 0.761643
Target:  5'- gUCAACGCaucugCAAUCAAuuGACuGCGCUCg -3'
miRNA:   3'- -AGUUGUGgua--GUUAGUU--CUG-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 35056 0.72 0.705874
Target:  5'- aCAGCGugucguuCCGUCGAgcaUGAGGCGCGCCg -3'
miRNA:   3'- aGUUGU-------GGUAGUUa--GUUCUGCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.