miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 35254 0.67 0.930767
Target:  5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3'
miRNA:   3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 35994 0.72 0.718132
Target:  5'- cCGACguuGCCGgacguGUCGaccAGGCGCGCCCa -3'
miRNA:   3'- aGUUG---UGGUagu--UAGU---UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 36864 0.73 0.660628
Target:  5'- gUCGGCGCCuuGUCGAgcgugauccuuUCGccagccgcugcgcGGAUGCGCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU-----------AGU-------------UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 37002 0.67 0.91676
Target:  5'- aCGACACCGUCccGGUCucguaccgcGACgucagcagcagccaGCGCCCg -3'
miRNA:   3'- aGUUGUGGUAG--UUAGuu-------CUG--------------CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 37075 0.72 0.703634
Target:  5'- cUCGAcCGCCAUCGAcgcgccggcgagauUCAGGGCGuCGCgCa -3'
miRNA:   3'- -AGUU-GUGGUAGUU--------------AGUUCUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 38614 0.8 0.280777
Target:  5'- cCAGCGCCAUCGAcgcgccgagccccaUCAGcGAUGUGCCCc -3'
miRNA:   3'- aGUUGUGGUAGUU--------------AGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 40235 0.67 0.912184
Target:  5'- aCAGCGCCGaaaUCGuUCcguuGAUGuCGCCCa -3'
miRNA:   3'- aGUUGUGGU---AGUuAGuu--CUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 41540 0.73 0.650357
Target:  5'- uUCAGCACguUCAGUUGAGACagguCGCCg -3'
miRNA:   3'- -AGUUGUGguAGUUAGUUCUGc---GCGGg -5'
24885 3' -49.6 NC_005284.1 + 41903 0.7 0.792817
Target:  5'- aCuGCGCCGUC-AUCuguAGACGgCGCCg -3'
miRNA:   3'- aGuUGUGGUAGuUAGu--UCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 42341 0.69 0.831797
Target:  5'- uUCGACgauccGCCcUCGAUCGAaacuGGCGCGCUg -3'
miRNA:   3'- -AGUUG-----UGGuAGUUAGUU----CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 42564 0.73 0.638929
Target:  5'- -gGAUGCUGUCGcUCGuGGACGUGCCCg -3'
miRNA:   3'- agUUGUGGUAGUuAGU-UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 43049 0.68 0.905397
Target:  5'- cCAGCguGCCGUCcuuUC---GCGCGCCCu -3'
miRNA:   3'- aGUUG--UGGUAGuu-AGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 43379 0.66 0.959958
Target:  5'- aUCGACGCagcgCGUCAagucccgcgcuGUCGAGGCGCGaCa -3'
miRNA:   3'- -AGUUGUG----GUAGU-----------UAGUUCUGCGCgGg -5'
24885 3' -49.6 NC_005284.1 + 44061 0.66 0.941666
Target:  5'- gCAGCAuCCAUUGcggCGAGugccuGCGCGCCUu -3'
miRNA:   3'- aGUUGU-GGUAGUua-GUUC-----UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44103 0.67 0.912184
Target:  5'- gCGAgGCCcgCcguGUCGAu-CGCGCCCg -3'
miRNA:   3'- aGUUgUGGuaGu--UAGUUcuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44259 0.67 0.930767
Target:  5'- cCGGCGaggaAUCGAUCGAG-CGCuGCCUg -3'
miRNA:   3'- aGUUGUgg--UAGUUAGUUCuGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 44325 0.66 0.959958
Target:  5'- gUCGGCACCAUgAcaCuuuGCGCcGCCCg -3'
miRNA:   3'- -AGUUGUGGUAgUuaGuucUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 44482 0.66 0.951386
Target:  5'- gCGGCGCCugcauGUCGAUCAGacucGACGuCGCgCu -3'
miRNA:   3'- aGUUGUGG-----UAGUUAGUU----CUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 44924 0.7 0.801866
Target:  5'- gCGGCuGCCGUCucgcgagcgauGAUCGccgcguaGGGCGUGCCCg -3'
miRNA:   3'- aGUUG-UGGUAG-----------UUAGU-------UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 45593 0.66 0.951386
Target:  5'- gUCAGCuuucccucuucgGCCAUCGAuUUGAGcUGCGCCg -3'
miRNA:   3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.