miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 47127 0.67 0.918676
Target:  5'- aUCAGC-CCAUUGAcc--GACGCcGCCCa -3'
miRNA:   3'- -AGUUGuGGUAGUUaguuCUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 47271 0.7 0.802863
Target:  5'- uUCGACugguaauuGCCGUCGAcCGAGAauuCGCCCg -3'
miRNA:   3'- -AGUUG--------UGGUAGUUaGUUCUgc-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47282 0.67 0.918041
Target:  5'- aUCGACgGCCGUCGccgcgugAUCAAcGCGCGCg- -3'
miRNA:   3'- -AGUUG-UGGUAGU-------UAGUUcUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 47753 0.67 0.931341
Target:  5'- gCGGCGCgCGUacguccgcguaagcaGAUCGAGGCGgCGCUCg -3'
miRNA:   3'- aGUUGUG-GUAg--------------UUAGUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 47796 0.73 0.627493
Target:  5'- -gAGCGCCAU--GUCGAG-CGCGCCa -3'
miRNA:   3'- agUUGUGGUAguUAGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 47944 0.69 0.831797
Target:  5'- --cACACgAUCGAUCGc-GCGCGCCa -3'
miRNA:   3'- aguUGUGgUAGUUAGUucUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 48740 0.68 0.875362
Target:  5'- aUCAGagaACCAUCAAcccgCGcGGCGUGCgCCg -3'
miRNA:   3'- -AGUUg--UGGUAGUUa---GUuCUGCGCG-GG- -5'
24885 3' -49.6 NC_005284.1 + 48881 0.66 0.951386
Target:  5'- gUCGGCGCCGU------GGACaCGCCCg -3'
miRNA:   3'- -AGUUGUGGUAguuaguUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 49143 0.71 0.761643
Target:  5'- -aGGCGCgCGUC-GUCAaggcGGACGgGCCCg -3'
miRNA:   3'- agUUGUG-GUAGuUAGU----UCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 49264 0.67 0.936365
Target:  5'- cCAACACCcuGUCAAaaaaauGAC-CGCCCg -3'
miRNA:   3'- aGUUGUGG--UAGUUaguu--CUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 49635 0.73 0.616062
Target:  5'- aUCGACGCCcaGUCGAucggauUCAGGACGauCCCg -3'
miRNA:   3'- -AGUUGUGG--UAGUU------AGUUCUGCgcGGG- -5'
24885 3' -49.6 NC_005284.1 + 51794 0.69 0.870473
Target:  5'- cCAGCACCAUCGuuuucccggccugCAuGGCGcCGCCa -3'
miRNA:   3'- aGUUGUGGUAGUua-----------GUuCUGC-GCGGg -5'
24885 3' -49.6 NC_005284.1 + 52646 0.77 0.431254
Target:  5'- aCAGCACCGUCAAUCuuguuGuCGuUGCCCu -3'
miRNA:   3'- aGUUGUGGUAGUUAGuu---CuGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 53541 0.67 0.910179
Target:  5'- --cGCGCCcgCAGUCGugaugaugaacaugAGcggcugccggcGCGCGCCCa -3'
miRNA:   3'- aguUGUGGuaGUUAGU--------------UC-----------UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 54069 0.73 0.627493
Target:  5'- cCAGCACaa-CGAUCAcGACGCGgCCa -3'
miRNA:   3'- aGUUGUGguaGUUAGUuCUGCGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.