miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 17406 0.66 0.955813
Target:  5'- gCAACugCGUgcuUC-AGACGCGCgCg -3'
miRNA:   3'- aGUUGugGUAguuAGuUCUGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 17016 0.67 0.912184
Target:  5'- cCGACGCgAUCAacGUCGAGGCGauuaCCg -3'
miRNA:   3'- aGUUGUGgUAGU--UAGUUCUGCgcg-GG- -5'
24885 3' -49.6 NC_005284.1 + 15090 0.69 0.858693
Target:  5'- aCuGCGCCGUCugccUCGcGGCGCGCUUg -3'
miRNA:   3'- aGuUGUGGUAGuu--AGUuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 14960 0.67 0.918676
Target:  5'- aUCGgccGCGCCAUgCAAUgCGGcACGCgGCCCg -3'
miRNA:   3'- -AGU---UGUGGUA-GUUA-GUUcUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 12987 0.67 0.936365
Target:  5'- aCGAUGCCAcCGAUCG-GACGCauaaagaaGCCUa -3'
miRNA:   3'- aGUUGUGGUaGUUAGUuCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 12434 0.66 0.959958
Target:  5'- gUCAgcGCGCCAguuUCGAUCGAGG-GCGgaucgucgaacCCCg -3'
miRNA:   3'- -AGU--UGUGGU---AGUUAGUUCUgCGC-----------GGG- -5'
24885 3' -49.6 NC_005284.1 + 11904 0.8 0.290486
Target:  5'- cUCGGCAUCGUCcAUCGAGAgGCccGCCCa -3'
miRNA:   3'- -AGUUGUGGUAGuUAGUUCUgCG--CGGG- -5'
24885 3' -49.6 NC_005284.1 + 11627 0.66 0.951386
Target:  5'- cUCGACGgCGUCGucaauGUCAccgcAGACGUcCCCu -3'
miRNA:   3'- -AGUUGUgGUAGU-----UAGU----UCUGCGcGGG- -5'
24885 3' -49.6 NC_005284.1 + 11038 0.7 0.792817
Target:  5'- cCAACAUCGaCAAUCu-GACGCGCg- -3'
miRNA:   3'- aGUUGUGGUaGUUAGuuCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 10922 0.7 0.812716
Target:  5'- aCGACGCgCGgaUC-AUCAAcGGCGCGCUCa -3'
miRNA:   3'- aGUUGUG-GU--AGuUAGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 10865 0.68 0.890947
Target:  5'- cCGACGUCAUCGGUau-GACG-GCCCg -3'
miRNA:   3'- aGUUGUGGUAGUUAguuCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 10619 1.13 0.002228
Target:  5'- uUCAACACCAUCAAUCAAGACGCGCCCc -3'
miRNA:   3'- -AGUUGUGGUAGUUAGUUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 10497 0.66 0.961538
Target:  5'- --uGCGCCGUCGGUgGucucggaugccgaucAGGCaGCGCUCg -3'
miRNA:   3'- aguUGUGGUAGUUAgU---------------UCUG-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 9804 0.68 0.898316
Target:  5'- cCAACgucGCCggCAGUCAGGaaaucgGCGCGCgCa -3'
miRNA:   3'- aGUUG---UGGuaGUUAGUUC------UGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 9290 0.66 0.959958
Target:  5'- aCGACgAUCGggCAGaCGAuGACGCGCCUg -3'
miRNA:   3'- aGUUG-UGGUa-GUUaGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 8528 0.67 0.918676
Target:  5'- cCGACAUCGgaCGcgCGuAGAUGCGUCCa -3'
miRNA:   3'- aGUUGUGGUa-GUuaGU-UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 8455 0.66 0.959958
Target:  5'- cUCGACGuguugCAGUC-GGGCGuCGCCCa -3'
miRNA:   3'- -AGUUGUggua-GUUAGuUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 8182 0.66 0.951386
Target:  5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3'
miRNA:   3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7676 0.67 0.930767
Target:  5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3'
miRNA:   3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7516 0.72 0.695774
Target:  5'- gCGACgGCCGUCGAUCAcGAgGUucucGCCCg -3'
miRNA:   3'- aGUUG-UGGUAGUUAGUuCUgCG----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.