Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24885 | 3' | -49.6 | NC_005284.1 | + | 7407 | 0.66 | 0.955813 |
Target: 5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3' miRNA: 3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 7114 | 0.67 | 0.936365 |
Target: 5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3' miRNA: 3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6964 | 0.67 | 0.934162 |
Target: 5'- cCGGCGCCGUauuucGUCGugaccgcguacauGGCGCGCUCg -3' miRNA: 3'- aGUUGUGGUAgu---UAGUu------------CUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6773 | 0.66 | 0.955813 |
Target: 5'- aCGACACgGUCAcgCGcGuCaCGCCCg -3' miRNA: 3'- aGUUGUGgUAGUuaGUuCuGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6640 | 0.72 | 0.718132 |
Target: 5'- uUCAGCAgCAcuUCGGcagaAAGACGCGCCg -3' miRNA: 3'- -AGUUGUgGU--AGUUag--UUCUGCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 6543 | 0.67 | 0.918676 |
Target: 5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3' miRNA: 3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5895 | 0.7 | 0.792817 |
Target: 5'- gCGACACCuUCGccgCcGGGCGUGUCCa -3' miRNA: 3'- aGUUGUGGuAGUua-GuUCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5826 | 0.66 | 0.955813 |
Target: 5'- gCAGCACCgcuucGUCGAUgcaguccgcCGGGGCaUGCCCa -3' miRNA: 3'- aGUUGUGG-----UAGUUA---------GUUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5716 | 0.67 | 0.918676 |
Target: 5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3' miRNA: 3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 5077 | 0.67 | 0.936365 |
Target: 5'- gCGACGCCgAUCGA-CAAGAUcCGUCUg -3' miRNA: 3'- aGUUGUGG-UAGUUaGUUCUGcGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 4925 | 0.68 | 0.905397 |
Target: 5'- cCGGCACUG-CAAUCGuauaucgacGGcCGUGCCCg -3' miRNA: 3'- aGUUGUGGUaGUUAGU---------UCuGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3973 | 0.66 | 0.959958 |
Target: 5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3' miRNA: 3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3677 | 0.66 | 0.948592 |
Target: 5'- -uGGCGCCGggggcauuuucaaaCAGUCucGAUGCGCUCa -3' miRNA: 3'- agUUGUGGUa-------------GUUAGuuCUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 3274 | 0.66 | 0.946672 |
Target: 5'- uUC-ACGCCAUCAgcGUCcc-GCGUGUCCc -3' miRNA: 3'- -AGuUGUGGUAGU--UAGuucUGCGCGGG- -5' |
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24885 | 3' | -49.6 | NC_005284.1 | + | 1463 | 0.67 | 0.912184 |
Target: 5'- gCAGCAgCGUgCGAUUAAGucuGCGCGCUUc -3' miRNA: 3'- aGUUGUgGUA-GUUAGUUC---UGCGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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