miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 32014 0.67 0.930767
Target:  5'- ---cCGCCGUCGu---AGACauGCGCCCa -3'
miRNA:   3'- aguuGUGGUAGUuaguUCUG--CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 17016 0.67 0.912184
Target:  5'- cCGACGCgAUCAacGUCGAGGCGauuaCCg -3'
miRNA:   3'- aGUUGUGgUAGU--UAGUUCUGCgcg-GG- -5'
24885 3' -49.6 NC_005284.1 + 47282 0.67 0.918041
Target:  5'- aUCGACgGCCGUCGccgcgugAUCAAcGCGCGCg- -3'
miRNA:   3'- -AGUUG-UGGUAGU-------UAGUUcUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 5716 0.67 0.918676
Target:  5'- gCAGCuCCGgcggCGAUgaaCAAGAagGCGCCCg -3'
miRNA:   3'- aGUUGuGGUa---GUUA---GUUCUg-CGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 32763 0.67 0.918676
Target:  5'- uUCAGgAUCGUCGcgCuc-GCGCGCCUc -3'
miRNA:   3'- -AGUUgUGGUAGUuaGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 20051 0.67 0.923044
Target:  5'- uUCGACGCCGaacuaucaacucguUCAGUCGauGGugGCGauaUCg -3'
miRNA:   3'- -AGUUGUGGU--------------AGUUAGU--UCugCGCg--GG- -5'
24885 3' -49.6 NC_005284.1 + 30356 0.67 0.924871
Target:  5'- aUCGAgGCgAUCGAgcgCGAgggcGAUGCGCUCg -3'
miRNA:   3'- -AGUUgUGgUAGUUa--GUU----CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 33812 0.67 0.930767
Target:  5'- uUCGuaauCGCCcgCAcgCAGGAgaguUGCGCCUc -3'
miRNA:   3'- -AGUu---GUGGuaGUuaGUUCU----GCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 35254 0.67 0.930767
Target:  5'- gCAGCACCcaaccuUCGccAUCGGGugGUGUCg -3'
miRNA:   3'- aGUUGUGGu-----AGU--UAGUUCugCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 1463 0.67 0.912184
Target:  5'- gCAGCAgCGUgCGAUUAAGucuGCGCGCUUc -3'
miRNA:   3'- aGUUGUgGUA-GUUAGUUC---UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 4925 0.68 0.905397
Target:  5'- cCGGCACUG-CAAUCGuauaucgacGGcCGUGCCCg -3'
miRNA:   3'- aGUUGUGGUaGUUAGU---------UCuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 9804 0.68 0.898316
Target:  5'- cCAACgucGCCggCAGUCAGGaaaucgGCGCGCgCa -3'
miRNA:   3'- aGUUG---UGGuaGUUAGUUC------UGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 54069 0.73 0.627493
Target:  5'- cCAGCACaa-CGAUCAcGACGCGgCCa -3'
miRNA:   3'- aGUUGUGguaGUUAGUuCUGCGCgGG- -5'
24885 3' -49.6 NC_005284.1 + 37075 0.72 0.703634
Target:  5'- cUCGAcCGCCAUCGAcgcgccggcgagauUCAGGGCGuCGCgCa -3'
miRNA:   3'- -AGUU-GUGGUAGUU--------------AGUUCUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 6640 0.72 0.718132
Target:  5'- uUCAGCAgCAcuUCGGcagaAAGACGCGCCg -3'
miRNA:   3'- -AGUUGUgGU--AGUUag--UUCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 26348 0.71 0.761643
Target:  5'- gCGGCACgGUCAAcgccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUAGUUaguuCUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 49143 0.71 0.761643
Target:  5'- -aGGCGCgCGUC-GUCAaggcGGACGgGCCCg -3'
miRNA:   3'- agUUGUG-GUAGuUAGU----UCUGCgCGGG- -5'
24885 3' -49.6 NC_005284.1 + 11038 0.7 0.792817
Target:  5'- cCAACAUCGaCAAUCu-GACGCGCg- -3'
miRNA:   3'- aGUUGUGGUaGUUAGuuCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 48740 0.68 0.875362
Target:  5'- aUCAGagaACCAUCAAcccgCGcGGCGUGCgCCg -3'
miRNA:   3'- -AGUUg--UGGUAGUUa---GUuCUGCGCG-GG- -5'
24885 3' -49.6 NC_005284.1 + 10865 0.68 0.890947
Target:  5'- cCGACGUCAUCGGUau-GACG-GCCCg -3'
miRNA:   3'- aGUUGUGGUAGUUAguuCUGCgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.