miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 8455 0.66 0.959958
Target:  5'- cUCGACGuguugCAGUC-GGGCGuCGCCCa -3'
miRNA:   3'- -AGUUGUggua-GUUAGuUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44259 0.67 0.930767
Target:  5'- cCGGCGaggaAUCGAUCGAG-CGCuGCCUg -3'
miRNA:   3'- aGUUGUgg--UAGUUAGUUCuGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 21571 0.67 0.924871
Target:  5'- aCAGCGCCGUgugcuuGUCgAAGugGCGCa- -3'
miRNA:   3'- aGUUGUGGUAgu----UAG-UUCugCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 10619 1.13 0.002228
Target:  5'- uUCAACACCAUCAAUCAAGACGCGCCCc -3'
miRNA:   3'- -AGUUGUGGUAGUUAGUUCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 6773 0.66 0.955813
Target:  5'- aCGACACgGUCAcgCGcGuCaCGCCCg -3'
miRNA:   3'- aGUUGUGgUAGUuaGUuCuGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 5826 0.66 0.955813
Target:  5'- gCAGCACCgcuucGUCGAUgcaguccgcCGGGGCaUGCCCa -3'
miRNA:   3'- aGUUGUGG-----UAGUUA---------GUUCUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 11627 0.66 0.951386
Target:  5'- cUCGACGgCGUCGucaauGUCAccgcAGACGUcCCCu -3'
miRNA:   3'- -AGUUGUgGUAGU-----UAGU----UCUGCGcGGG- -5'
24885 3' -49.6 NC_005284.1 + 8182 0.66 0.951386
Target:  5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3'
miRNA:   3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 27794 0.66 0.946672
Target:  5'- --cGCGCCcuuuUCGGaCGAGugGCGUGCCCg -3'
miRNA:   3'- aguUGUGGu---AGUUaGUUC--UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7114 0.67 0.936365
Target:  5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3'
miRNA:   3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44061 0.66 0.941666
Target:  5'- gCAGCAuCCAUUGcggCGAGugccuGCGCGCCUu -3'
miRNA:   3'- aGUUGU-GGUAGUua-GUUC-----UGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 32942 0.66 0.950928
Target:  5'- gCGGCACCAUCGccCAcgccggcggcgcuGGAaGCGCCg -3'
miRNA:   3'- aGUUGUGGUAGUuaGU-------------UCUgCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 3973 0.66 0.959958
Target:  5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3'
miRNA:   3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 49264 0.67 0.936365
Target:  5'- cCAACACCcuGUCAAaaaaauGAC-CGCCCg -3'
miRNA:   3'- aGUUGUGG--UAGUUaguu--CUGcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44325 0.66 0.959958
Target:  5'- gUCGGCACCAUgAcaCuuuGCGCcGCCCg -3'
miRNA:   3'- -AGUUGUGGUAgUuaGuucUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 45593 0.66 0.951386
Target:  5'- gUCAGCuuucccucuucgGCCAUCGAuUUGAGcUGCGCCg -3'
miRNA:   3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 12987 0.67 0.936365
Target:  5'- aCGAUGCCAcCGAUCG-GACGCauaaagaaGCCUa -3'
miRNA:   3'- aGUUGUGGUaGUUAGUuCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7676 0.67 0.930767
Target:  5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3'
miRNA:   3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7407 0.66 0.955813
Target:  5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3'
miRNA:   3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44482 0.66 0.951386
Target:  5'- gCGGCGCCugcauGUCGAUCAGacucGACGuCGCgCu -3'
miRNA:   3'- aGUUGUGG-----UAGUUAGUU----CUGC-GCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.