miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24885 3' -49.6 NC_005284.1 + 6543 0.67 0.918676
Target:  5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3'
miRNA:   3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 8528 0.67 0.918676
Target:  5'- cCGACAUCGgaCGcgCGuAGAUGCGUCCa -3'
miRNA:   3'- aGUUGUGGUa-GUuaGU-UCUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 12987 0.67 0.936365
Target:  5'- aCGAUGCCAcCGAUCG-GACGCauaaagaaGCCUa -3'
miRNA:   3'- aGUUGUGGUaGUUAGUuCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 8182 0.66 0.951386
Target:  5'- -gAACGCCcgCcgcUCGGGACGUucggcguuGCCCa -3'
miRNA:   3'- agUUGUGGuaGuu-AGUUCUGCG--------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 27281 0.69 0.858693
Target:  5'- cUCGACGcgcCCAUCGAUCAucgccaccguGGGCGCaagauaGUCCg -3'
miRNA:   3'- -AGUUGU---GGUAGUUAGU----------UCUGCG------CGGG- -5'
24885 3' -49.6 NC_005284.1 + 40235 0.67 0.912184
Target:  5'- aCAGCGCCGaaaUCGuUCcguuGAUGuCGCCCa -3'
miRNA:   3'- aGUUGUGGU---AGUuAGuu--CUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 21571 0.67 0.924871
Target:  5'- aCAGCGCCGUgugcuuGUCgAAGugGCGCa- -3'
miRNA:   3'- aGUUGUGGUAgu----UAG-UUCugCGCGgg -5'
24885 3' -49.6 NC_005284.1 + 11627 0.66 0.951386
Target:  5'- cUCGACGgCGUCGucaauGUCAccgcAGACGUcCCCu -3'
miRNA:   3'- -AGUUGUgGUAGU-----UAGU----UCUGCGcGGG- -5'
24885 3' -49.6 NC_005284.1 + 44103 0.67 0.912184
Target:  5'- gCGAgGCCcgCcguGUCGAu-CGCGCCCg -3'
miRNA:   3'- aGUUgUGGuaGu--UAGUUcuGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 44482 0.66 0.951386
Target:  5'- gCGGCGCCugcauGUCGAUCAGacucGACGuCGCgCu -3'
miRNA:   3'- aGUUGUGG-----UAGUUAGUU----CUGC-GCGgG- -5'
24885 3' -49.6 NC_005284.1 + 33618 0.67 0.918676
Target:  5'- cUCGAUgaGCCGUUGcUCGAGcCGCGCgCg -3'
miRNA:   3'- -AGUUG--UGGUAGUuAGUUCuGCGCGgG- -5'
24885 3' -49.6 NC_005284.1 + 47127 0.67 0.918676
Target:  5'- aUCAGC-CCAUUGAcc--GACGCcGCCCa -3'
miRNA:   3'- -AGUUGuGGUAGUUaguuCUGCG-CGGG- -5'
24885 3' -49.6 NC_005284.1 + 7676 0.67 0.930767
Target:  5'- gUCAGCuugucgggguCCAUCGAa-AGGACGuUGCCCu -3'
miRNA:   3'- -AGUUGu---------GGUAGUUagUUCUGC-GCGGG- -5'
24885 3' -49.6 NC_005284.1 + 7114 0.67 0.936365
Target:  5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3'
miRNA:   3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 3274 0.66 0.946672
Target:  5'- uUC-ACGCCAUCAgcGUCcc-GCGUGUCCc -3'
miRNA:   3'- -AGuUGUGGUAGU--UAGuucUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 45593 0.66 0.951386
Target:  5'- gUCAGCuuucccucuucgGCCAUCGAuUUGAGcUGCGCCg -3'
miRNA:   3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 10922 0.7 0.812716
Target:  5'- aCGACGCgCGgaUC-AUCAAcGGCGCGCUCa -3'
miRNA:   3'- aGUUGUG-GU--AGuUAGUU-CUGCGCGGG- -5'
24885 3' -49.6 NC_005284.1 + 31602 0.69 0.858693
Target:  5'- gCAGCugcaGCCAUCAcaCGAGcggaACGCGCCg -3'
miRNA:   3'- aGUUG----UGGUAGUuaGUUC----UGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 23328 0.68 0.883293
Target:  5'- gCGGCACgG-CGGUCAAuugggggcccGGCGCGCCg -3'
miRNA:   3'- aGUUGUGgUaGUUAGUU----------CUGCGCGGg -5'
24885 3' -49.6 NC_005284.1 + 53541 0.67 0.910179
Target:  5'- --cGCGCCcgCAGUCGugaugaugaacaugAGcggcugccggcGCGCGCCCa -3'
miRNA:   3'- aguUGUGGuaGUUAGU--------------UC-----------UGCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.